RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 PPFIA2O75334 1257 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 TADA3O75528 432 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 ZNF189O75820 626 aaPredicted RBP9.59□□□□□ -0.87
GGA3-223ENST00000621870 SARSP49591 514 aaKnown RBP9.59□□□□□ -0.87
GGA3-223ENST00000621870 ITGA8P53708 1063 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 GTF2BQ00403 316 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 CAPRIN1Q14444 709 aaKnown RBP9.59□□□□□ -0.87
GGA3-223ENST00000621870 TFDP3Q5H9I0 405 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 MEI1Q5TIA1 1274 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 CES5AQ6NT32 575 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 RBM23Q86U06 439 aaKnown RBP9.59□□□□□ -0.87
GGA3-223ENST00000621870 SPDL1Q96EA4 605 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 SGF29Q96ES7 293 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 ELMO2Q96JJ3 720 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 FTHL17Q9BXU8 183 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 RBM22Q9NW64 420 aaKnown RBP eCLIP9.59□□□□□ -0.87
GGA3-223ENST00000621870 ZNF214Q9UL59 606 aaPredicted RBP9.59□□□□□ -0.87
GGA3-223ENST00000621870 PHLPP1O60346 1717 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 SF3B1O75533 1304 aaKnown RBP eCLIP9.59□□□□□ -0.876e-8■■■■■ 80.2
GGA3-223ENST00000621870 F8VP50 259 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 KCNK1O00180 336 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 PTPN1P18031 435 aaKnown RBP9.59□□□□□ -0.87
GGA3-223ENST00000621870 AMPD2Q01433 879 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 MUM1Q2TAK8 710 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 RETSATQ6NUM9 610 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 WDR59Q6PJI9 974 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 ABHD15Q6UXT9 468 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 SYDE1Q6ZW31 735 aaPredicted RBP9.59□□□□□ -0.87
GGA3-223ENST00000621870 TMA16Q96EY4 203 aaKnown RBP9.59□□□□□ -0.87
GGA3-223ENST00000621870 PPP1R36Q96LQ0 422 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 IKZF4Q9H2S9 585 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 TRABDQ9H4I3 376 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.59□□□□□ -0.87
GGA3-223ENST00000621870 RBPJLQ9UBG7 517 aa9.59□□□□□ -0.87
GGA3-223ENST00000621870 MICAL2O94851 1124 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 LTFP02788 710 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 INHAP05111 366 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 PYGLP06737 847 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 ADRB2P07550 413 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 OR1E1P30953 314 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 MAGEA4P43358 317 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 BRCC3P46736 316 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 RGS4P49798 205 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 PTK2BQ14289 1009 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 LONRF1Q17RB8 773 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 DENND5BQ6ZUT9 1274 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 UNC45BQ8IWX7 931 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 ACO2Q99798 780 aaKnown RBP9.58□□□□□ -0.88
GGA3-223ENST00000621870 IPPQ9Y573 584 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 SOWAHBA6NEL2 793 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 CASQ2O14958 399 aaPredicted RBP9.58□□□□□ -0.88
GGA3-223ENST00000621870 SEPT4O43236 478 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 RAMP2O60895 175 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 TMCC1O94876 653 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 MMP3P08254 477 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 TGM2P21980 687 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 HMOX2P30519 316 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 SPRP35270 261 aaPredicted RBP9.58□□□□□ -0.88
GGA3-223ENST00000621870 COILP38432 576 aaPredicted RBP9.58□□□□□ -0.88
GGA3-223ENST00000621870 CTCFP49711 727 aaPredicted RBP9.58□□□□□ -0.88
GGA3-223ENST00000621870 ZNF200P98182 395 aaPredicted RBP9.58□□□□□ -0.88
GGA3-223ENST00000621870 C1QBPQ07021 282 aaKnown RBP9.58□□□□□ -0.88
GGA3-223ENST00000621870 CLEC16AQ2KHT3 1053 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 TPGS1Q6ZTW0 290 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 MCOLN2Q8IZK6 566 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 CALML6Q8TD86 181 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 NCLNQ969V3 563 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 ZFP42Q96MM3 310 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 TMEM121Q9BTD3 319 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 TASP1Q9H6P5 420 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 GOLGA2P5Q9HBQ8 144 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 ATP13A1Q9HD20 1204 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 MARCH2Q9P0N8 246 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 SLC39A10Q9ULF5 831 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 SLC27A5Q9Y2P5 690 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 MRPS23Q9Y3D9 190 aaKnown RBP9.58□□□□□ -0.88
GGA3-223ENST00000621870 PIK3C2AO00443 1686 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 TUBP50607 506 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 VCPP55072 806 aaKnown RBP9.58□□□□□ -0.88
GGA3-223ENST00000621870 SPDYAQ5MJ70 313 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 MROH9Q5TGP6 573 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 RBM43Q6ZSC3 357 aaKnown RBP9.58□□□□□ -0.88
GGA3-223ENST00000621870 SLAIN1Q8ND83 568 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 OR2W6PQ8NHA6 318 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 STAMBPL1Q96FJ0 436 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 PCMTD2Q9NV79 361 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 PADI3Q9ULW8 664 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 PCDHGB4Q9UN71 923 aa9.58□□□□□ -0.88
GGA3-223ENST00000621870 ZBTB22O15209 634 aa9.57□□□□□ -0.88
GGA3-223ENST00000621870 PRPF4O43172 522 aaKnown RBP eCLIP9.57□□□□□ -0.88
GGA3-223ENST00000621870 HNRNPH2P55795 449 aaKnown RBP9.57□□□□□ -0.88
GGA3-223ENST00000621870 LAMB3Q13751 1172 aa9.57□□□□□ -0.88
GGA3-223ENST00000621870 STARD3Q14849 445 aa9.57□□□□□ -0.88
GGA3-223ENST00000621870 PDK2Q15119 407 aa9.57□□□□□ -0.88
GGA3-223ENST00000621870 IL17AQ16552 155 aa9.57□□□□□ -0.88
GGA3-223ENST00000621870 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.57□□□□□ -0.88
GGA3-223ENST00000621870 MARC1Q5VT66 337 aa9.57□□□□□ -0.88
GGA3-223ENST00000621870 SDHAF4Q5VUM1 108 aa9.57□□□□□ -0.88
GGA3-223ENST00000621870 CORO1BQ9BR76 489 aa9.57□□□□□ -0.88
GGA3-223ENST00000621870 UBXN6Q9BZV1 441 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms