RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 ZNF197O14709 1029 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 THAP12O43422 761 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 PAEPP09466 180 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 YWHAQP27348 245 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 JAM2P57087 298 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 FANCCQ00597 558 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 TNK2Q07912 1038 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 ADIGQ0VDE8 80 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 TAF3Q5VWG9 929 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 TRIM68Q6AZZ1 485 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 FAM71AQ8IYT1 594 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 TSPY26PQ9H489 355 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 SDK1Q7Z5N4 2213 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 A0A1W2PQH9 124 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 FAM92AA1XBS5 289 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 OTOL1A6NHN0 477 aaPredicted RBP14.23□□□□□ -0.13
LINC00540-202ENST00000616974 HEPACAM2A8MVW5 462 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 GFPT2O94808 682 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 LCP1P13796 627 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 CDC25CP30307 473 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 GPD2P43304 727 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 NOP9Q86U38 636 aaKnown RBP14.23□□□□□ -0.13
LINC00540-202ENST00000616974 SLC35F5Q8WV83 523 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 ERGIC2Q96RQ1 377 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 ULBP1Q9BZM6 244 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 TASP1Q9H6P5 420 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 SORCS3Q9UPU3 1222 aa14.23□□□□□ -0.13
LINC00540-202ENST00000616974 CFAP54Q96N23 3096 aa14.22□□□□□ -0.13
LINC00540-202ENST00000616974 DCXO43602 365 aa14.22□□□□□ -0.13
LINC00540-202ENST00000616974 CD72P21854 359 aa14.22□□□□□ -0.13
LINC00540-202ENST00000616974 ARID5AQ03989 594 aa14.22□□□□□ -0.13
LINC00540-202ENST00000616974 NR1I3Q14994 352 aa14.22□□□□□ -0.13
LINC00540-202ENST00000616974 CNGA2Q16280 664 aa14.22□□□□□ -0.13
LINC00540-202ENST00000616974 RAB41Q5JT25 222 aa14.22□□□□□ -0.13
LINC00540-202ENST00000616974 NAIF1Q69YI7 327 aaPredicted RBP14.22□□□□□ -0.13
LINC00540-202ENST00000616974 DNAAF5Q86Y56 855 aa14.22□□□□□ -0.13
LINC00540-202ENST00000616974 PLCD3Q8N3E9 789 aa14.22□□□□□ -0.13
LINC00540-202ENST00000616974 DDX1Q92499 740 aaKnown RBP14.22□□□□□ -0.13
LINC00540-202ENST00000616974 ZFRQ96KR1 1074 aaKnown RBP14.22□□□□□ -0.13
LINC00540-202ENST00000616974 PCMTD1Q96MG8 357 aaPredicted RBP14.22□□□□□ -0.13
LINC00540-202ENST00000616974 GKN1Q9NS71 199 aa14.22□□□□□ -0.13
LINC00540-202ENST00000616974 ATP8B3O60423 1300 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 KRBA1A5PL33 1030 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 SHISA7A6NL88 538 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 PI4K2BG5E9Z4 385 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 COCHO43405 550 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 OAS1P00973 400 aaKnown RBP14.21□□□□□ -0.13
LINC00540-202ENST00000616974 CKMP06732 381 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 ZDHHC11BP0C7U3 371 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 SOX9P48436 509 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 TKTL1P51854 596 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 BCAT1P54687 386 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 YWHAEP62258 255 aaKnown RBP14.21□□□□□ -0.13
LINC00540-202ENST00000616974 ZXDAP98168 799 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 BST2Q10589 180 aaKnown RBP14.21□□□□□ -0.13
LINC00540-202ENST00000616974 TDGQ13569 410 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 FKBP15Q5T1M5 1219 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 MON1AQ86VX9 555 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 LEMD2Q8NC56 503 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 OLIG1Q8TAK6 271 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 MRPS31Q92665 395 aaKnown RBP14.21□□□□□ -0.13
LINC00540-202ENST00000616974 IFNKQ9P0W0 207 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 USP3Q9Y6I4 520 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 YJEFN3A6XGL0 299 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 E7ENQ6 273 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 XPO1O14980 1071 aaKnown RBP14.21□□□□□ -0.13
LINC00540-202ENST00000616974 SERPINC1P01008 464 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 PLA2G4AP47712 749 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 TAF5Q15542 800 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 TTC39CQ8N584 583 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 C1orf131Q8NDD1 294 aaKnown RBP14.21□□□□□ -0.13
LINC00540-202ENST00000616974 P2RY11Q96G91 374 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 RBSNQ9H1K0 784 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 ZFP14Q9HCL3 533 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 GTSE1Q9NYZ3 720 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 TRPM5Q9NZQ8 1165 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 CA14Q9ULX7 337 aa14.21□□□□□ -0.13
LINC00540-202ENST00000616974 MMEP08473 750 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 CYP11B1P15538 503 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 HDCP19113 662 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 ZNF445P59923 1031 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 GOLGA8FQ08AF8 430 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 GOLGA8DPQ0D2H9 430 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 SCUBE3Q8IX30 993 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 EPS8L1Q8TE68 723 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 BAP1Q92560 729 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 EDEM1Q92611 657 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 CHFRQ96EP1 664 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 CPXM1Q96SM3 734 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 STK33Q9BYT3 514 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 XPO4Q9C0E2 1151 aaKnown RBP14.2□□□□□ -0.14
LINC00540-202ENST00000616974 MIS12Q9H081 205 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 ST7Q9NRC1 585 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 ANTXRLA6NF34 631 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 ARNTLO00327 626 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 CHRNB2P17787 502 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 AVPR1AP37288 418 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 PBX1P40424 430 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 ENOSF1Q7L5Y1 443 aa14.2□□□□□ -0.14
LINC00540-202ENST00000616974 ANKRD20A12PQ8NF67 263 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms