RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 PPP1R26Q5T8A7 1209 aaPredicted RBP10.63□□□□□ -0.71
UPF1-213ENST00000601981 PAPD7Q5XG87 772 aaKnown RBP10.63□□□□□ -0.71
UPF1-213ENST00000601981 PTCRAQ6ISU1 281 aaPredicted RBP10.63□□□□□ -0.71
UPF1-213ENST00000601981 PDZD4Q76G19 769 aaPredicted RBP10.63□□□□□ -0.71
UPF1-213ENST00000601981 ZNF677Q86XU0 584 aa10.63□□□□□ -0.71
UPF1-213ENST00000601981 FUKQ8N0W3 1084 aa10.63□□□□□ -0.71
UPF1-213ENST00000601981 C12orf76Q8N812 135 aaPredicted RBP10.63□□□□□ -0.71
UPF1-213ENST00000601981 C12orf29Q8N999 325 aa10.63□□□□□ -0.71
UPF1-213ENST00000601981 PSMG2Q969U7 264 aa10.63□□□□□ -0.71
UPF1-213ENST00000601981 SPATA17Q96L03 361 aa10.63□□□□□ -0.71
UPF1-213ENST00000601981 C8orf48Q96LL4 319 aa10.63□□□□□ -0.71
UPF1-213ENST00000601981 APOL5Q9BWW9 433 aa10.63□□□□□ -0.71
UPF1-213ENST00000601981 PACSIN1Q9BY11 444 aa10.63□□□□□ -0.71
UPF1-213ENST00000601981 ZNF518BQ9C0D4 1074 aa10.63□□□□□ -0.71
UPF1-213ENST00000601981 PDCL3Q9H2J4 239 aa10.63□□□□□ -0.71
UPF1-213ENST00000601981 CDC23Q9UJX2 597 aa10.63□□□□□ -0.71
UPF1-213ENST00000601981 CEP83Q9Y592 693 aa10.63□□□□□ -0.71
UPF1-213ENST00000601981 CAPN6Q9Y6Q1 641 aa10.63□□□□□ -0.71
UPF1-213ENST00000601981 OBSL1O75147 1896 aa10.63□□□□□ -0.71
UPF1-213ENST00000601981 F8VP50 259 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 CLDN5O00501 218 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 CYP26A1O43174 497 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 THAP12O43422 761 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 MBTPS2O43462 519 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 RTN3O95197 1032 aaPredicted RBP10.62□□□□□ -0.71
UPF1-213ENST00000601981 VNN2O95498 520 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 TMEM253P0C7T8 217 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 SETSIPP0DME0 302 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 GZMAP12544 262 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 CYP11B1P15538 503 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 CDC25CP30307 473 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 ZNF132P52740 706 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 AMPD2Q01433 879 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 CDR2Q01850 454 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 BST2Q10589 180 aaKnown RBP10.62□□□□□ -0.71
UPF1-213ENST00000601981 CNGA2Q16280 664 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 DDR2Q16832 855 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 WHAMMP3Q1A5X7 153 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 GOLGA7BQ2TAP0 167 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 PABPC1LQ4VXU2 614 aaKnown RBP10.62□□□□□ -0.71
UPF1-213ENST00000601981 DENND5BQ6ZUT9 1274 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 NOP9Q86U38 636 aaKnown RBP10.62□□□□□ -0.71
UPF1-213ENST00000601981 TTC9BQ8N6N2 239 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 ANKRD52Q8NB46 1076 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 SLC20A1Q8WUM9 679 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 ZNF707Q96C28 371 aaPredicted RBP10.62□□□□□ -0.71
UPF1-213ENST00000601981 CALR3Q96L12 384 aaKnown RBP10.62□□□□□ -0.71
UPF1-213ENST00000601981 CORO1BQ9BR76 489 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 DUSP16Q9BY84 665 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 S1PR5Q9H228 398 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 CRISPLD1Q9H336 500 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 PNPLA8Q9NP80 782 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 PRDM6Q9NQX0 595 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 COMMD8Q9NX08 183 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 SALL4Q9UJQ4 1053 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 TSPAN16Q9UKR8 245 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 JRKLQ9Y4A0 524 aa10.62□□□□□ -0.71
UPF1-213ENST00000601981 USP15Q9Y4E8 981 aaPredicted RBP10.62□□□□□ -0.71
UPF1-213ENST00000601981 CLUHO75153 1309 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 DOCK8Q8NF50 2099 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 ANAPC1Q9H1A4 1944 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 ANKRD62A6NC57 917 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 SLC38A8A6NNN8 435 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 M0QYV0 167 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 O00370 1275 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 RTN2O75298 545 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 SOAT2O75908 522 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 ATP1A1P05023 1023 aaKnown RBP10.61□□□□□ -0.71
UPF1-213ENST00000601981 RHOP08100 348 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 CHRNB2P17787 502 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 ATF6P18850 670 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 BRD2P25440 801 aaKnown RBP10.61□□□□□ -0.71
UPF1-213ENST00000601981 PPP3CCP48454 512 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 CDR1P51861 262 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 GALCP54803 685 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 MAP3K7CLP57077 242 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 SNX16P57768 344 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 FMO1Q01740 532 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 TCEAL1Q15170 157 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 CCDC142Q17RM4 750 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 ARHGAP15Q53QZ3 475 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 LCLAT1Q6UWP7 414 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 CLEC20AQ6ZU45 233 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 GRASPQ7Z6J2 395 aaPredicted RBP10.61□□□□□ -0.71
UPF1-213ENST00000601981 DNAJB7Q7Z6W7 309 aaPredicted RBP10.61□□□□□ -0.71
UPF1-213ENST00000601981 SLC47A2Q86VL8 602 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 NUP93Q8N1F7 819 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 MNS1Q8NEH6 495 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 GIPC2Q8TF65 315 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 CTNNBL1Q8WYA6 563 aaPredicted RBP10.61□□□□□ -0.71
UPF1-213ENST00000601981 RFFLQ8WZ73 363 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 DDX1Q92499 740 aaKnown RBP10.61□□□□□ -0.71
UPF1-213ENST00000601981 SUSD6Q92537 303 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 ACSF2Q96CM8 615 aaPredicted RBP10.61□□□□□ -0.71
UPF1-213ENST00000601981 TRMT2BQ96GJ1 504 aaKnown RBP10.61□□□□□ -0.71
UPF1-213ENST00000601981 SLITRK1Q96PX8 696 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 LPIN3Q9BQK8 851 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 UBXN6Q9BZV1 441 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 ISCUQ9H1K1 167 aa10.61□□□□□ -0.71
UPF1-213ENST00000601981 FBXO44Q9H4M3 255 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms