RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 UBXN2BQ14CS0 331 aa20.42■□□□□ 0.86
UPF1-212ENST00000601689 PDGFRLQ15198 375 aa20.42■□□□□ 0.86
UPF1-212ENST00000601689 GOLGA7BQ2TAP0 167 aa20.42■□□□□ 0.86
UPF1-212ENST00000601689 FKBP15Q5T1M5 1219 aa20.42■□□□□ 0.86
UPF1-212ENST00000601689 SNX30Q5VWJ9 437 aa20.42■□□□□ 0.86
UPF1-212ENST00000601689 RBBP8NLQ8NC74 664 aaPredicted RBP20.42■□□□□ 0.86
UPF1-212ENST00000601689 CYP2S1Q96SQ9 504 aa20.42■□□□□ 0.86
UPF1-212ENST00000601689 SAMSN1Q9NSI8 373 aaKnown RBP20.42■□□□□ 0.86
UPF1-212ENST00000601689 SCML2Q9UQR0 700 aa20.42■□□□□ 0.86
UPF1-212ENST00000601689 TICRRQ7Z2Z1 1910 aa20.41■□□□□ 0.86
UPF1-212ENST00000601689 FAM92AA1XBS5 289 aa20.41■□□□□ 0.86
UPF1-212ENST00000601689 SLC9A3R1O14745 358 aaPredicted RBP20.41■□□□□ 0.86
UPF1-212ENST00000601689 SETSIPP0DME0 302 aa20.41■□□□□ 0.86
UPF1-212ENST00000601689 TCF3P15923 654 aa20.41■□□□□ 0.86
UPF1-212ENST00000601689 SLC7A9P82251 487 aa20.41■□□□□ 0.86
UPF1-212ENST00000601689 TYRO3Q06418 890 aa20.41■□□□□ 0.86
UPF1-212ENST00000601689 MTF1Q14872 753 aa20.41■□□□□ 0.86
UPF1-212ENST00000601689 KLHL40Q2TBA0 621 aa20.41■□□□□ 0.86
UPF1-212ENST00000601689 ARHGEF19Q8IW93 802 aa20.41■□□□□ 0.86
UPF1-212ENST00000601689 KIAA1958Q8N8K9 716 aa20.41■□□□□ 0.86
UPF1-212ENST00000601689 OSBPL6Q9BZF3 934 aa20.41■□□□□ 0.86
UPF1-212ENST00000601689 GKN1Q9NS71 199 aa20.41■□□□□ 0.86
UPF1-212ENST00000601689 GMIPQ9P107 970 aa20.41■□□□□ 0.86
UPF1-212ENST00000601689 TMEM63CQ9P1W3 806 aa20.41■□□□□ 0.86
UPF1-212ENST00000601689 ARIH1Q9Y4X5 557 aaPredicted RBP20.41■□□□□ 0.86
UPF1-212ENST00000601689 PIAS3Q9Y6X2 628 aa20.41■□□□□ 0.86
UPF1-212ENST00000601689 PATJQ8NI35 1801 aa20.41■□□□□ 0.86
UPF1-212ENST00000601689 SMTNL1A8MU46 457 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 XPO1O14980 1071 aaKnown RBP20.4■□□□□ 0.86
UPF1-212ENST00000601689 OAS1P00973 400 aaKnown RBP20.4■□□□□ 0.86
UPF1-212ENST00000601689 SLC9A1P19634 815 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 PON1P27169 355 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 USP8P40818 1118 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 HELZP42694 1942 aaKnown RBP20.4■□□□□ 0.86
UPF1-212ENST00000601689 MAGEA9P43362 315 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 KIF11P52732 1056 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 CNGA2Q16280 664 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 ARHGAP44Q17R89 818 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 SKOR2Q2VWA4 1001 aaPredicted RBP20.4■□□□□ 0.86
UPF1-212ENST00000601689 ITPRIPL2Q3MIP1 535 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 MIA3Q5JRA6 1907 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 LCLAT1Q6UWP7 414 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 PIGZQ86VD9 579 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 UBR7Q8N806 425 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 SH3RF2Q8TEC5 729 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 FAM3CQ92520 227 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 RSPRY1Q96DX4 576 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 DUS2Q9NX74 493 aaKnown RBP20.4■□□□□ 0.86
UPF1-212ENST00000601689 CCL26Q9Y258 94 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 SH3BP1Q9Y3L3 701 aa20.4■□□□□ 0.86
UPF1-212ENST00000601689 ATP5C1P36542 298 aaKnown RBP20.39■□□□□ 0.85
UPF1-212ENST00000601689 RUNX3Q13761 415 aa20.39■□□□□ 0.85
UPF1-212ENST00000601689 RALGPS2Q86X27 583 aaPredicted RBP20.39■□□□□ 0.85
UPF1-212ENST00000601689 SIX6OS1Q8N1H7 587 aa20.39■□□□□ 0.85
UPF1-212ENST00000601689 CPA6Q8N4T0 437 aa20.39■□□□□ 0.85
UPF1-212ENST00000601689 PJA1Q8NG27 643 aa20.39■□□□□ 0.85
UPF1-212ENST00000601689 OSCP1Q8WVF1 389 aa20.39■□□□□ 0.85
UPF1-212ENST00000601689 KAT5Q92993 513 aa20.39■□□□□ 0.85
UPF1-212ENST00000601689 ATP2A3Q93084 1043 aa20.39■□□□□ 0.85
UPF1-212ENST00000601689 NAGPAQ9UK23 515 aa20.39■□□□□ 0.85
UPF1-212ENST00000601689 CPQQ9Y646 472 aa20.39■□□□□ 0.85
UPF1-212ENST00000601689 FAM170BA6NMN3 283 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 HHLA1C9JL84 531 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 M0QYV0 167 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 LEFTY2O00292 366 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 O00370 1275 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 TLR5O60602 858 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 ZDHHC11BP0C7U3 371 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 PTK2Q05397 1052 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 PDE4CQ08493 712 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 ZNF77Q15935 545 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 CWF19L1Q69YN2 538 aaKnown RBP20.38■□□□□ 0.85
UPF1-212ENST00000601689 CCDC186Q7Z3E2 898 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 GOLGA1Q92805 767 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 ZFYVE19Q96K21 471 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 SLC22A12Q96S37 553 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 LTB4R2Q9NPC1 389 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 FANCLQ9NW38 375 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 TBC1D14Q9P2M4 693 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 ZDBF2Q9HCK1 2354 aa20.38■□□□□ 0.85
UPF1-212ENST00000601689 BECN2A8MW95 431 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 COCHO43405 550 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 NFATC1O95644 943 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 OLFM2O95897 454 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 GNA15P30679 374 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 PLA2G4AP47712 749 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 TKTL1P51854 596 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 VCPP55072 806 aaKnown RBP20.37■□□□□ 0.85
UPF1-212ENST00000601689 BPIFB4P59827 614 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 TPM4P67936 248 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 USP4Q13107 963 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 C11orf57Q6ZUT1 292 aaPredicted RBP20.37■□□□□ 0.85
UPF1-212ENST00000601689 RSRC2Q7L4I2 434 aaKnown RBP20.37■□□□□ 0.85
UPF1-212ENST00000601689 TTC30AQ86WT1 665 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 UBA3Q8TBC4 463 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 KREMEN1Q96MU8 473 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 LRRC3BQ96PB8 259 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 FAM83CQ9BQN1 747 aa20.37■□□□□ 0.85
UPF1-212ENST00000601689 DDX23Q9BUQ8 820 aaKnown RBP20.37■□□□□ 0.85
UPF1-212ENST00000601689 RNF38Q9H0F5 515 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms