RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 RTN3O95197 1032 aaPredicted RBP16.22■□□□□ 0.19
UPF1-206ENST00000598471 ZBED1O96006 694 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 ATF2P15336 505 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 MAN1A1P33908 653 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 SLC1A1P43005 524 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 SLC5A3P53794 718 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 DAOAP59103 153 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 MRPS5P82675 430 aaKnown RBP16.22■□□□□ 0.19
UPF1-206ENST00000598471 SMAD3P84022 425 aaKnown RBP16.22■□□□□ 0.19
UPF1-206ENST00000598471 GPM6BQ13491 265 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 PIGHQ14442 188 aaPredicted RBP16.22■□□□□ 0.19
UPF1-206ENST00000598471 PLPP4Q5VZY2 271 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 SLFN11Q7Z7L1 901 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 NUP93Q8N1F7 819 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 MICAL1Q8TDZ2 1067 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 FAM149B1Q96BN6 582 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 SPATA17Q96L03 361 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 NKX2-4Q9H2Z4 354 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 FBXO44Q9H4M3 255 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 SLC28A3Q9HAS3 691 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 COMMD8Q9NX08 183 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 EHD2Q9NZN4 543 aa16.22■□□□□ 0.19
UPF1-206ENST00000598471 PTPRDP23468 1912 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 MYH10P35580 1976 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 H3BNC9 293 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 PRRG1O14668 218 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 SPOPO43791 374 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 GABBR2O75899 941 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 PROSCO94903 275 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 ARHGEF15O94989 841 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 GJB6O95452 261 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 FTCDO95954 541 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 CNPP09543 421 aaKnown RBP16.21■□□□□ 0.19
UPF1-206ENST00000598471 GPD1P21695 349 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 PSMA2P25787 234 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 RFC1P35251 1148 aaPredicted RBP16.21■□□□□ 0.19
UPF1-206ENST00000598471 RNASE9P60153 205 aaKnown RBP16.21■□□□□ 0.19
UPF1-206ENST00000598471 RPL7AP62424 266 aaKnown RBP16.21■□□□□ 0.19
UPF1-206ENST00000598471 VEPH1Q14D04 833 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 DDR2Q16832 855 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 ARCQ7LC44 396 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 GPRIN1Q7Z2K8 1008 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 JOSD2Q8TAC2 188 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 NCAPGQ9BPX3 1015 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 CYP4F11Q9HBI6 524 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 TMEM59LQ9UK28 342 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 SLC27A5Q9Y2P5 690 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 ALG6Q9Y672 507 aa16.21■□□□□ 0.19
UPF1-206ENST00000598471 PLXNA4Q9HCM2 1894 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 MIF4GDA9UHW6 222 aaKnown RBP16.2■□□□□ 0.18
UPF1-206ENST00000598471 TNFRSF10BO14763 440 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 DAB1O75553 588 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 VNN2O95498 520 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 USP17L7P0C7H9 530 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 PDGFRAP16234 1089 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 KLRC2P26717 231 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 SDC4P31431 198 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 ALDH1A3P47895 512 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 ERVFC1P60507 584 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 YWHAZP63104 245 aaKnown RBP16.2■□□□□ 0.18
UPF1-206ENST00000598471 IFRD2Q12894 506 aaPredicted RBP16.2■□□□□ 0.18
UPF1-206ENST00000598471 PLD1Q13393 1074 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 ACAP1Q15027 740 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 RPS6KA1Q15418 735 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 MEI1Q5TIA1 1274 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 DENND5BQ6ZUT9 1274 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 ARHGAP18Q8N392 663 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 TTC9BQ8N6N2 239 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 NIPA2Q8N8Q9 360 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 MRPL43Q8N983 215 aaKnown RBP16.2■□□□□ 0.18
UPF1-206ENST00000598471 CLEC4CQ8WTT0 213 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 BTBD6Q96KE9 485 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 KLHL5Q96PQ7 755 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 CNPY3Q9BT09 278 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 LMAN2LQ9H0V9 348 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 YIPF1Q9Y548 306 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 USP3Q9Y6I4 520 aa16.2■□□□□ 0.18
UPF1-206ENST00000598471 GBF1Q92538 1859 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 C2orf71A6NGG8 1288 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 C2CD4BA6NLJ0 364 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 DPYSL4O14531 572 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 CAPN9O14815 690 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 FSCN2O14926 492 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 GRM6O15303 877 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 GRAP2O75791 330 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 RNF8O76064 485 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 C1RP00736 705 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 COMTP21964 271 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 YWHAQP27348 245 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 GPR15P49685 360 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 ZNF143P52747 638 aaPredicted RBP16.19■□□□□ 0.18
UPF1-206ENST00000598471 PM20D1Q6GTS8 502 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 CCDC149Q6ZUS6 474 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 NT5DC3Q86UY8 548 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 TCEAL8Q8IYN2 117 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 EMC1Q8N766 993 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 RXFP2Q8WXD0 754 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 PIWIL1Q96J94 861 aaKnown RBP16.19■□□□□ 0.18
UPF1-206ENST00000598471 TRIM7Q9C029 511 aa16.19■□□□□ 0.18
UPF1-206ENST00000598471 CRISPLD1Q9H336 500 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms