RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ZFYVE19Q96K21 471 aa17.04■□□□□ 0.32
TRIM28-213ENST00000598355 ZSWIM1Q9BR11 485 aa17.04■□□□□ 0.32
TRIM28-213ENST00000598355 CYLDQ9NQC7 956 aa17.04■□□□□ 0.32
TRIM28-213ENST00000598355 HPS4Q9NQG7 708 aa17.04■□□□□ 0.32
TRIM28-213ENST00000598355 TSPAN16Q9UKR8 245 aa17.04■□□□□ 0.32
TRIM28-213ENST00000598355 KIAA1257Q9ULG3 409 aa17.04■□□□□ 0.32
TRIM28-213ENST00000598355 PIAS3Q9Y6X2 628 aa17.04■□□□□ 0.32
TRIM28-213ENST00000598355 RNF225M0QZC1 329 aaPredicted RBP17.03■□□□□ 0.32
TRIM28-213ENST00000598355 MAN2B1O00754 1011 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 PRKCSHP14314 528 aaPredicted RBP17.03■□□□□ 0.32
TRIM28-213ENST00000598355 CTHP32929 405 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 MTIF2P46199 727 aaKnown RBP17.03■□□□□ 0.32
TRIM28-213ENST00000598355 PGFP49763 221 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 IFRD2Q12894 506 aaPredicted RBP17.03■□□□□ 0.32
TRIM28-213ENST00000598355 FZD5Q13467 585 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 TPD52L1Q16890 204 aaPredicted RBP17.03■□□□□ 0.32
TRIM28-213ENST00000598355 TMEM270Q6UE05 265 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 ZNF852Q6ZMS4 543 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 C11orf57Q6ZUT1 292 aaPredicted RBP17.03■□□□□ 0.32
TRIM28-213ENST00000598355 RRAGAQ7L523 313 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 ENOSF1Q7L5Y1 443 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 ZNF276Q8N554 614 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 SH3RF2Q8TEC5 729 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 TFAP2BQ92481 460 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 CLDN23Q96B33 292 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 CHFRQ96EP1 664 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 C8orf33Q9H7E9 229 aaPredicted RBP17.03■□□□□ 0.32
TRIM28-213ENST00000598355 SIX2Q9NPC8 291 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 SAMSN1Q9NSI8 373 aaKnown RBP17.03■□□□□ 0.32
TRIM28-213ENST00000598355 THG1LQ9NWX6 298 aaKnown RBP17.03■□□□□ 0.32
TRIM28-213ENST00000598355 GTSE1Q9NYZ3 720 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 SIT1Q9Y3P8 196 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 NFE2L3Q9Y4A8 694 aa17.03■□□□□ 0.32
TRIM28-213ENST00000598355 XPO1O14980 1071 aaKnown RBP17.02■□□□□ 0.32
TRIM28-213ENST00000598355 CYP26A1O43174 497 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 COCHO43405 550 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 EEF1GP26641 437 aaKnown RBP17.02■□□□□ 0.32
TRIM28-213ENST00000598355 MAGEA9P43362 315 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 PLA2G4AP47712 749 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 TNK2Q07912 1038 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 BST2Q10589 180 aaKnown RBP17.02■□□□□ 0.32
TRIM28-213ENST00000598355 STX1AQ16623 288 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 EXOC3L4Q17RC7 722 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 GOLGA7BQ2TAP0 167 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 DPY19L2P1Q6NXN4 242 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 LCLAT1Q6UWP7 414 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 GBP6Q6ZN66 633 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 PIGZQ86VD9 579 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 RALGPS2Q86X27 583 aaPredicted RBP17.02■□□□□ 0.32
TRIM28-213ENST00000598355 RBBP8NLQ8NC74 664 aaPredicted RBP17.02■□□□□ 0.32
TRIM28-213ENST00000598355 CSGALNACT1Q8TDX6 532 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 OSCP1Q8WVF1 389 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 FAM81BQ96LP2 452 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 NELL2Q99435 816 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 TUBGCP2Q9BSJ2 902 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 CRACR2AQ9BSW2 395 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 NDST4Q9H3R1 872 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 TLR8Q9NR97 1041 aaKnown RBP17.02■□□□□ 0.32
TRIM28-213ENST00000598355 GKN1Q9NS71 199 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 ANO10Q9NW15 660 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 OSER1Q9NX31 292 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 APEX2Q9UBZ4 518 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.02■□□□□ 0.32
TRIM28-213ENST00000598355 MRPS17Q9Y2R5 130 aaKnown RBP17.02■□□□□ 0.32
TRIM28-213ENST00000598355 MTF2Q9Y483 593 aaPredicted RBP17.02■□□□□ 0.32
TRIM28-213ENST00000598355 PCDHB4Q9Y5E5 795 aa17.02■□□□□ 0.32
TRIM28-213ENST00000598355 OTOL1A6NHN0 477 aaPredicted RBP17.01■□□□□ 0.31
TRIM28-213ENST00000598355 KCNJ18B7U540 433 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 SPECC1L-ADORA2AF8WAN1 911 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 LEFTY2O00292 366 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 TULP2O00295 520 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 SETSIPP0DME0 302 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 SLC9A1P19634 815 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 CD72P21854 359 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 PON1P27169 355 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 RPS9P46781 194 aaKnown RBP17.01■□□□□ 0.31
TRIM28-213ENST00000598355 PDE4CQ08493 712 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 KCNJ12Q14500 433 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 PDGFRLQ15198 375 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 STILQ15468 1287 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 MEA1Q16626 185 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 EML3Q32P44 896 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 ITPRIPL2Q3MIP1 535 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 VWA3BQ502W6 1294 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 TCP11X2Q5H9J9 407 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 HECTD3Q5T447 861 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 KLHDC10Q6PID8 442 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 TXNDC11Q6PKC3 985 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 BHLHA9Q7RTU4 235 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 DTWD2Q8NBA8 298 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 SHC3Q92529 594 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 CCSER2Q9H7U1 834 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 NMUR1Q9HB89 426 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 CHORDC1Q9UHD1 332 aaPredicted RBP17.01■□□□□ 0.31
TRIM28-213ENST00000598355 CPQQ9Y646 472 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 VPS13AQ96RL7 3174 aa17.01■□□□□ 0.31
TRIM28-213ENST00000598355 PIEZO1Q92508 2521 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 BECN2A8MW95 431 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 TLR5O60602 858 aa17■□□□□ 0.31
TRIM28-213ENST00000598355 DCNP07585 359 aaKnown RBP17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms