RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 TDRD10Q5VZ19 366 aaKnown RBP10.61□□□□□ -0.71
LIG1-209ENST00000596104 LYSMD4Q5XG99 296 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 KIAA1211LQ6NV74 962 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 HS2ST1Q7LGA3 356 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 DDX42Q86XP3 938 aaKnown RBP eCLIP10.61□□□□□ -0.71
LIG1-209ENST00000596104 CCDC65Q8IXS2 484 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 OR6B3Q8NGW1 331 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 HMGB4Q8WW32 186 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 HPS3Q969F9 1004 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 OTUB2Q96DC9 234 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 SLITRK1Q96PX8 696 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 DUSP9Q99956 384 aaKnown RBP10.61□□□□□ -0.71
LIG1-209ENST00000596104 B3GNT5Q9BYG0 378 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 PANK2Q9BZ23 570 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 ELOVL4Q9GZR5 314 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 GZF1Q9H116 711 aaPredicted RBP10.61□□□□□ -0.71
LIG1-209ENST00000596104 SNX25Q9H3E2 840 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 DPEP3Q9H4B8 488 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 KIAA1586Q9HCI6 787 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 TBC1D14Q9P2M4 693 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 HCN2Q9UL51 889 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 CIZ1Q9ULV3 898 aaPredicted RBP10.61□□□□□ -0.71
LIG1-209ENST00000596104 NEUROG3Q9Y4Z2 214 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 PKD1L2Q7Z442 2459 aa10.61□□□□□ -0.71
LIG1-209ENST00000596104 TCHHQ07283 1943 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 MYO16Q9Y6X6 1858 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 CACNA1EQ15878 2313 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 SPAARA0A1B0GVQ0 90 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 TGFB1I1O43294 461 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 COCHO43405 550 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 TULP3O75386 442 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 STAU1O95793 577 aaKnown RBP10.6□□□□□ -0.71
LIG1-209ENST00000596104 GABRG2P18507 467 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 YWHAQP27348 245 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 DPP6P42658 865 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 GAD2Q05329 585 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 CUL4AQ13619 759 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 BYSLQ13895 437 aaKnown RBP10.6□□□□□ -0.71
LIG1-209ENST00000596104 PSMD6Q15008 389 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 EPM2AIP1Q7L775 607 aaPredicted RBP10.6□□□□□ -0.71
LIG1-209ENST00000596104 NUP93Q8N1F7 819 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 B3GALNT2Q8NCR0 500 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 KCNV2Q8TDN2 545 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 ZCCHC14Q8WYQ9 949 aaKnown RBP10.6□□□□□ -0.71
LIG1-209ENST00000596104 OVCA2Q8WZ82 227 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 WBP2Q969T9 261 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 CGRRF1Q99675 332 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 XYLT2Q9H1B5 865 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 SLC32A1Q9H598 525 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 CAPN10Q9HC96 672 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 CD248Q9HCU0 757 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 FSCN3Q9NQT6 498 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 IL37Q9NZH6 218 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 BCCIPQ9P287 314 aaKnown RBP eCLIP10.6□□□□□ -0.71
LIG1-209ENST00000596104 MSRB2Q9Y3D2 182 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 ANAPC1Q9H1A4 1944 aa10.6□□□□□ -0.71
LIG1-209ENST00000596104 A0A1W2PQF6 199 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 FAM92AA1XBS5 289 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 TBC1D3BA6NDS4 549 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 TRIM24O15164 1050 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 EIF3DO15371 548 aaKnown RBP eCLIP10.59□□□□□ -0.71
LIG1-209ENST00000596104 RTN3O95197 1032 aaPredicted RBP10.59□□□□□ -0.71
LIG1-209ENST00000596104 CFIP05156 583 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 ZDHHC11BP0C7U3 371 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 DLATP10515 647 aaKnown RBP10.59□□□□□ -0.71
LIG1-209ENST00000596104 TNNC1P63316 161 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 SIM1P81133 766 aaPredicted RBP10.59□□□□□ -0.71
LIG1-209ENST00000596104 CEBPZQ03701 1054 aaKnown RBP10.59□□□□□ -0.71
LIG1-209ENST00000596104 CYP24A1Q07973 514 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 IFRD2Q12894 506 aaPredicted RBP10.59□□□□□ -0.71
LIG1-209ENST00000596104 COL9A2Q14055 689 aaPredicted RBP10.59□□□□□ -0.71
LIG1-209ENST00000596104 SLC39A14Q15043 492 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 SNRNP35Q16560 246 aaKnown RBP10.59□□□□□ -0.71
LIG1-209ENST00000596104 DUOXA1Q1HG43 343 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 WDR72Q3MJ13 1102 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 HECTD3Q5T447 861 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 SNX30Q5VWJ9 437 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 PAQR9Q6ZVX9 377 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 STXBP4Q6ZWJ1 553 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 MIB1Q86YT6 1006 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 BBS7Q8IWZ6 715 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 PGBD3Q8N328 593 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 PDILTQ8N807 584 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 ZNF513Q8N8E2 541 aaPredicted RBP10.59□□□□□ -0.71
LIG1-209ENST00000596104 NAT16Q8N8M0 369 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 TERB1Q8NA31 727 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 RDH13Q8NBN7 331 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 PDZD8Q8NEN9 1154 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 SCAMP5Q8TAC9 235 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 ZNF507Q8TCN5 953 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 ZNF516Q92618 1163 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 FBXO32Q969P5 355 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 USP28Q96RU2 1077 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 KCNK16Q96T55 309 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 TRIM9Q9C026 710 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 TNMDQ9H2S6 317 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 AGPAT3Q9NRZ7 376 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 KBTBD4Q9NVX7 518 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 CALCOCO1Q9P1Z2 691 aa10.59□□□□□ -0.71
LIG1-209ENST00000596104 DEC1Q9P2X7 70 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms