RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 SLC9A3R1O14745 358 aaPredicted RBP12.48□□□□□ -0.41
CLIP3-204ENST00000590559 ADAM23O75077 832 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 CASP1P29466 404 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 P2RY2P41231 377 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 CYP2J2P51589 502 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 SEC13P55735 322 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 CREB5Q02930 508 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 HS2ST1Q7LGA3 356 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 NELFCDQ8IXH7 590 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 ETFBKMTQ8IXQ9 262 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 CCDC33Q8N5R6 958 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 PARD3BQ8TEW8 1205 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 SYAP1Q96A49 352 aaPredicted RBP12.48□□□□□ -0.41
CLIP3-204ENST00000590559 CCDC127Q96BQ5 260 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 SLITRK1Q96PX8 696 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 KCNK16Q96T55 309 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 PNKPQ96T60 521 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 DMAC2Q9NW81 257 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 CFAP97Q9P2B7 532 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 HCN2Q9UL51 889 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 INVSQ9Y283 1065 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 DSPP15924 2871 aaKnown RBP12.48□□□□□ -0.41
CLIP3-204ENST00000590559 ADAMTS9Q9P2N4 1935 aa12.48□□□□□ -0.41
CLIP3-204ENST00000590559 PCDH15Q96QU1 1955 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 C4orf47A7E2U8 309 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 A8MXQ7 604 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 PATE3B3GLJ2 98 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 SGK1O00141 431 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 POLR2DO15514 142 aaKnown RBP12.47□□□□□ -0.41
CLIP3-204ENST00000590559 COCHO43405 550 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 KLRC4O43908 158 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 GREM1O60565 184 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 RTN3O95197 1032 aaPredicted RBP12.47□□□□□ -0.41
CLIP3-204ENST00000590559 KAT7O95251 611 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 VNN1O95497 513 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 C4BPAP04003 597 aaKnown RBP12.47□□□□□ -0.41
CLIP3-204ENST00000590559 CENPBP07199 599 aaPredicted RBP12.47□□□□□ -0.41
CLIP3-204ENST00000590559 YWHAQP27348 245 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 TNFRSF4P43489 277 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 CASP4P49662 377 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 TUBP50607 506 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 CDH8P55286 799 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 TNNC1P63316 161 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 KNOP1Q1ED39 458 aaKnown RBP12.47□□□□□ -0.41
CLIP3-204ENST00000590559 EMC10Q5UCC4 262 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 PEAR1Q5VY43 1037 aaPredicted RBP12.47□□□□□ -0.41
CLIP3-204ENST00000590559 ANO7Q6IWH7 933 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 DDX42Q86XP3 938 aaKnown RBP eCLIP12.47□□□□□ -0.41
CLIP3-204ENST00000590559 ALLCQ8N6M5 410 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 TXNDC5Q8NBS9 432 aaKnown RBP12.47□□□□□ -0.41
CLIP3-204ENST00000590559 PDZD8Q8NEN9 1154 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 ZMIZ2Q8NF64 920 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 SCAMP5Q8TAC9 235 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 WBP2Q969T9 261 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 OTUB2Q96DC9 234 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 ZNF396Q96N95 335 aaPredicted RBP12.47□□□□□ -0.41
CLIP3-204ENST00000590559 SDCBP2Q9H190 292 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 SMYD3Q9H7B4 428 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 CSNK1G1Q9HCP0 422 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 COMMD8Q9NX08 183 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 SMPD4Q9NXE4 827 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 TBC1D14Q9P2M4 693 aa12.47□□□□□ -0.41
CLIP3-204ENST00000590559 PCNX2A6NKB5 2137 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 LRRIQ3A6PVS8 624 aaPredicted RBP12.46□□□□□ -0.41
CLIP3-204ENST00000590559 SCAMP3O14828 347 aaKnown RBP12.46□□□□□ -0.41
CLIP3-204ENST00000590559 HOXC11O43248 304 aaPredicted RBP12.46□□□□□ -0.41
CLIP3-204ENST00000590559 ADH1CP00326 375 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 MBL2P11226 248 aaPredicted RBP12.46□□□□□ -0.41
CLIP3-204ENST00000590559 ADH5P11766 374 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 GBP1P32455 592 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 GRIA2P42262 883 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 PGFP49763 221 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 CUL4BQ13620 913 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 MAP7D1Q3KQU3 841 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 LY6G5CQ5SRR4 150 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 RESP18Q5W5W9 173 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 FAM35AQ86V20 835 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 SLC9A9Q8IVB4 645 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 FUKQ8N0W3 1084 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 FRMD1Q8N878 549 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 BACH2Q9BYV9 841 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 BLZF1Q9H2G9 400 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 CCSER2Q9H7U1 834 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 CD248Q9HCU0 757 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 SLC39A2Q9NP94 309 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 FOXD4L1Q9NU39 408 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 NXF1Q9UBU9 619 aaKnown RBP12.46□□□□□ -0.41
CLIP3-204ENST00000590559 CHORDC1Q9UHD1 332 aaPredicted RBP12.46□□□□□ -0.41
CLIP3-204ENST00000590559 EVLQ9UI08 416 aaPredicted RBP12.46□□□□□ -0.41
CLIP3-204ENST00000590559 MBD1Q9UIS9 605 aaPredicted RBP12.46□□□□□ -0.41
CLIP3-204ENST00000590559 PCDHA7Q9UN72 937 aa12.46□□□□□ -0.41
CLIP3-204ENST00000590559 GON4LQ3T8J9 2241 aa12.45□□□□□ -0.42
CLIP3-204ENST00000590559 ITPR1Q14643 2758 aa12.45□□□□□ -0.42
CLIP3-204ENST00000590559 GIPC1O14908 333 aa12.45□□□□□ -0.42
CLIP3-204ENST00000590559 BEST1O76090 585 aa12.45□□□□□ -0.42
CLIP3-204ENST00000590559 KLF8O95600 359 aaPredicted RBP12.45□□□□□ -0.42
CLIP3-204ENST00000590559 ABL1P00519 1130 aa12.45□□□□□ -0.42
CLIP3-204ENST00000590559 APODP05090 189 aa12.45□□□□□ -0.42
CLIP3-204ENST00000590559 TIE1P35590 1138 aa12.45□□□□□ -0.42
CLIP3-204ENST00000590559 AP3M2P53677 418 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms