RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 ZNF689Q96CS4 500 aaPredicted RBP5.65□□□□□ -1.5
LIG3-210ENST00000588109 KLHDC7BQ96G42 594 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 TMEM169Q96HH4 297 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 FAXDC2Q96IV6 333 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 SENP8Q96LD8 212 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 KREMEN1Q96MU8 473 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 ZNF558Q96NG5 402 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 RAD9AQ99638 391 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 MRPL45Q9BRJ2 306 aaKnown RBP5.65□□□□□ -1.5
LIG3-210ENST00000588109 NAA15Q9BXJ9 866 aaKnown RBP5.65□□□□□ -1.5
LIG3-210ENST00000588109 BCO2Q9BYV7 579 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 PDCL3Q9H2J4 239 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 AKTIPQ9H8T0 292 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 CISHQ9NSE2 258 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 GDAP2Q9NXN4 497 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 PUF60Q9UHX1 559 aaKnown RBP5.65□□□□□ -1.5
LIG3-210ENST00000588109 ADAM28Q9UKQ2 775 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 DSEQ9UL01 958 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 MYO6Q9UM54 1294 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 PCDHB12Q9Y5F1 795 aa5.65□□□□□ -1.5
LIG3-210ENST00000588109 MRPL42Q9Y6G3 142 aaKnown RBP5.65□□□□□ -1.5
LIG3-210ENST00000588109 MKI67P46013 3256 aaKnown RBP5.65□□□□□ -1.51
LIG3-210ENST00000588109 SF3B1O75533 1304 aaKnown RBP eCLIP5.65□□□□□ -1.514e-6■■■■■ 117.9
LIG3-210ENST00000588109 PTPRSQ13332 1948 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 METTL12A8MUP2 240 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 GRXCR1A8MXD5 290 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 A8MXQ7 604 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 F8W810 466 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 FOXN3O00409 490 aaPredicted RBP5.64□□□□□ -1.51
LIG3-210ENST00000588109 SOX1O00570 391 aaPredicted RBP5.64□□□□□ -1.51
LIG3-210ENST00000588109 CYP26A1O43174 497 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 TACC1O75410 805 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 SERPING1P05155 500 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 ITGB1P05556 798 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 PDGFRBP09619 1106 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 SKILP12757 684 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 CD19P15391 556 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 ACO1P21399 889 aaKnown RBP5.64□□□□□ -1.51
LIG3-210ENST00000588109 GNA15P30679 374 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 DEKP35659 375 aaKnown RBP5.64□□□□□ -1.51
LIG3-210ENST00000588109 PPM1AP35813 382 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 GNL1P36915 607 aaPredicted RBP5.64□□□□□ -1.51
LIG3-210ENST00000588109 LHX1P48742 406 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 NDST1P52848 882 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 RABGGTBP53611 331 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 BPIFB4P59827 614 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 HTRA4P83105 476 aaPredicted RBP5.64□□□□□ -1.51
LIG3-210ENST00000588109 GSTM4Q03013 218 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 PCDH1Q08174 1060 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 KLHL30Q0D2K2 578 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 ELAVL2Q12926 359 aaKnown RBP5.64□□□□□ -1.51
LIG3-210ENST00000588109 ADGRE1Q14246 886 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 SOWAHAQ2M3V2 549 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 SPRED3Q2MJR0 410 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.64□□□□□ -1.51
LIG3-210ENST00000588109 FAM171A1Q5VUB5 890 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 WSCD1Q658N2 575 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 KIAA1841Q6NSI8 718 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 FUT10Q6P4F1 479 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 CYP26C1Q6V0L0 522 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 VPS36Q86VN1 386 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 CEP57Q86XR8 500 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 LRRC8AQ8IWT6 810 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 FAM71AQ8IYT1 594 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 THEM5Q8N1Q8 247 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 TMEM86AQ8N2M4 240 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 PDCL2Q8N4E4 241 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 COLGALT1Q8NBJ5 622 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 GALNT11Q8NCW6 608 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 CCDC112Q8NEF3 446 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 WFDC12Q8WWY7 111 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 SHC3Q92529 594 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 SYN2Q92777 582 aaPredicted RBP5.64□□□□□ -1.51
LIG3-210ENST00000588109 PANX2Q96RD6 677 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 TCF12Q99081 682 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 DNAJC7Q99615 494 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 BAG1Q99933 345 aaPredicted RBP5.64□□□□□ -1.51
LIG3-210ENST00000588109 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.64□□□□□ -1.51
LIG3-210ENST00000588109 NT5C1AQ9BXI3 368 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 GPR88Q9GZN0 384 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 SDCBP2Q9H190 292 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 CLEC4MQ9H2X3 399 aaPredicted RBP5.64□□□□□ -1.51
LIG3-210ENST00000588109 DEF6Q9H4E7 631 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 FAM124BQ9H5Z6 455 aaPredicted RBP5.64□□□□□ -1.51
LIG3-210ENST00000588109 CWH43Q9H720 699 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 RC3H2Q9HBD1 1191 aaKnown RBP5.64□□□□□ -1.51
LIG3-210ENST00000588109 SEPT11Q9NVA2 429 aaKnown RBP5.64□□□□□ -1.51
LIG3-210ENST00000588109 MARCH5Q9NX47 278 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 DDX43Q9NXZ2 648 aaKnown RBP5.64□□□□□ -1.51
LIG3-210ENST00000588109 AIPL1Q9NZN9 384 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 BARX2Q9UMQ3 279 aaPredicted RBP5.64□□□□□ -1.51
LIG3-210ENST00000588109 L1RE1Q9UN81 338 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 TIMM13Q9Y5L4 95 aaPredicted RBP5.64□□□□□ -1.51
LIG3-210ENST00000588109 SCN1AP35498 2009 aa5.64□□□□□ -1.51
LIG3-210ENST00000588109 COL4A6Q14031 1691 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 TMEM238LA0A1B0GVL6 79 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 LCHNA4D1U4 455 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 M0QZQ0 153 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 SYN3O14994 580 aa5.63□□□□□ -1.51
LIG3-210ENST00000588109 THAP12O43422 761 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms