RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 CALUO43852 315 aaPredicted RBP14.54□□□□□ -0.08
CCDC40-216ENST00000576241 RPP40O75818 363 aaKnown RBP14.54□□□□□ -0.08
CCDC40-216ENST00000576241 C4BPAP04003 597 aaKnown RBP14.54□□□□□ -0.08
CCDC40-216ENST00000576241 RPN1P04843 607 aaKnown RBP14.54□□□□□ -0.08
CCDC40-216ENST00000576241 CCDC192P0DO97 292 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 TRIM21P19474 475 aaKnown RBP14.54□□□□□ -0.08
CCDC40-216ENST00000576241 YWHAQP27348 245 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 RAP1GAPP47736 663 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 PXNP49023 591 aaPredicted RBP14.54□□□□□ -0.08
CCDC40-216ENST00000576241 CDH8P55286 799 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 SGSM1Q2NKQ1 1148 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 STPG1Q5TH74 334 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 PSAPL1Q6NUJ1 521 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 FAM35AQ86V20 835 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 DDX42Q86XP3 938 aaKnown RBP eCLIP14.54□□□□□ -0.08
CCDC40-216ENST00000576241 CAMKK1Q8N5S9 505 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 FAM160A2Q8N612 972 aaPredicted RBP14.54□□□□□ -0.08
CCDC40-216ENST00000576241 KIAA1958Q8N8K9 716 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 RPLP0P6Q8NHW5 317 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 TMC2Q8TDI7 906 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 GAB3Q8WWW8 586 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 FBXO32Q969P5 355 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 SMARCD1Q96GM5 515 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 LSM14BQ9BX40 385 aaKnown RBP14.54□□□□□ -0.08
CCDC40-216ENST00000576241 LINC00597Q9H2U6 94 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 DMAP1Q9NPF5 467 aaPredicted RBP14.54□□□□□ -0.08
CCDC40-216ENST00000576241 TMEM30AQ9NV96 361 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 SMPD4Q9NXE4 827 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 HPSEQ9Y251 543 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 ATP6V1DQ9Y5K8 247 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 CPQQ9Y646 472 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 DENND4CQ5VZ89 1909 aa14.54□□□□□ -0.08
CCDC40-216ENST00000576241 VNN1O95497 513 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 OLFM2O95897 454 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 OAS1P00973 400 aaKnown RBP14.53□□□□□ -0.08
CCDC40-216ENST00000576241 MBL2P11226 248 aaPredicted RBP14.53□□□□□ -0.08
CCDC40-216ENST00000576241 HOXC13P31276 330 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 PIK3CAP42336 1068 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 NDUFA8P51970 172 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 DLG4P78352 724 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 FOXC1Q12948 553 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 CCDC6Q16204 474 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 ZACNQ401N2 412 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 SYT13Q7L8C5 426 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 CACNA2D4Q7Z3S7 1137 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 FILIP1Q7Z7B0 1213 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 C12orf50Q8NA57 414 aaPredicted RBP14.53□□□□□ -0.08
CCDC40-216ENST00000576241 OVCA2Q8WZ82 227 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 TAF4BQ92750 862 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 HHIPQ96QV1 700 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 ADAM33Q9BZ11 813 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 RNF38Q9H0F5 515 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 KRT82Q9NSB4 513 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 CFAP97Q9P2B7 532 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 WASF3Q9UPY6 502 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 ITPR1Q14643 2758 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 MAST4O15021 2626 aa14.53□□□□□ -0.08
CCDC40-216ENST00000576241 IKBKBO14920 756 aa14.52□□□□□ -0.09
CCDC40-216ENST00000576241 AKAP3O75969 853 aa14.52□□□□□ -0.09
CCDC40-216ENST00000576241 VAMP7P51809 220 aa14.52□□□□□ -0.09
CCDC40-216ENST00000576241 SLC5A3P53794 718 aa14.52□□□□□ -0.09
CCDC40-216ENST00000576241 ZXDBP98169 803 aa14.52□□□□□ -0.09
CCDC40-216ENST00000576241 DMC1Q14565 340 aa14.52□□□□□ -0.09
CCDC40-216ENST00000576241 SV2AQ7L0J3 742 aa14.52□□□□□ -0.09
CCDC40-216ENST00000576241 ACOT1Q86TX2 421 aa14.52□□□□□ -0.09
CCDC40-216ENST00000576241 ELMO3Q96BJ8 720 aa14.52□□□□□ -0.09
CCDC40-216ENST00000576241 KCNK16Q96T55 309 aa14.52□□□□□ -0.09
CCDC40-216ENST00000576241 IMPG2Q9BZV3 1241 aa14.52□□□□□ -0.09
CCDC40-216ENST00000576241 SCAND2PQ9GZW5 306 aaPredicted RBP14.52□□□□□ -0.09
CCDC40-216ENST00000576241 SDCBP2Q9H190 292 aa14.52□□□□□ -0.09
CCDC40-216ENST00000576241 TRAF3IP3Q9Y228 551 aa14.52□□□□□ -0.09
CCDC40-216ENST00000576241 ZNF638Q14966 1978 aaKnown RBP14.52□□□□□ -0.09
CCDC40-216ENST00000576241 DMXL2Q8TDJ6 3036 aa14.52□□□□□ -0.09
CCDC40-216ENST00000576241 AXIN1O15169 862 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 AP1G2O75843 785 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 RHOBTB3O94955 611 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 APBB3O95704 486 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 TOP3BO95985 862 aaKnown RBP14.51□□□□□ -0.09
CCDC40-216ENST00000576241 ADH1CP00326 375 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 CYP17A1P05093 508 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 PRR29P0C7W0 189 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 KRT13P13646 458 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 NR2F2P24468 414 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 RPL13P26373 211 aaKnown RBP14.51□□□□□ -0.09
CCDC40-216ENST00000576241 UNC93AQ86WB7 457 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 FUKQ8N0W3 1084 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 SCAMP5Q8TAC9 235 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 ZCCHC14Q8WYQ9 949 aaKnown RBP14.51□□□□□ -0.09
CCDC40-216ENST00000576241 EZH1Q92800 747 aaPredicted RBP14.51□□□□□ -0.09
CCDC40-216ENST00000576241 GATA6Q92908 595 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 CCDC34Q96HJ3 373 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 LOXL4Q96JB6 756 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 NACA2Q9H009 215 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 ARRDC1-AS1Q9H2J1 176 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 POLR3BQ9NW08 1133 aaPredicted RBP14.51□□□□□ -0.09
CCDC40-216ENST00000576241 COMMD8Q9NX08 183 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 TBC1D14Q9P2M4 693 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 ZDHHC9Q9Y397 364 aa14.51□□□□□ -0.09
CCDC40-216ENST00000576241 HELZ2Q9BYK8 2649 aaKnown RBP14.51□□□□□ -0.09
CCDC40-216ENST00000576241 FAM237AA0A1B0GTK4 181 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms