RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 CPXM1Q96SM3 734 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 LRRC4Q9HBW1 653 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 ZNHIT6Q9NWK9 470 aaKnown RBP19.15■□□□□ 0.66
CCDC40-213ENST00000574933 CLUHO75153 1309 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 EYSQ5T1H1 3165 aa19.14■□□□□ 0.66
CCDC40-213ENST00000574933 TADA3O75528 432 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 FBXO21O94952 628 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 CDC25CP30307 473 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 CCR2P41597 374 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 GABRB2P47870 512 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 RGS7P49802 495 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 TKTL1P51854 596 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 SNX16P57768 344 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 NTHL1P78549 312 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 TAF10Q12962 218 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 CBX2Q14781 532 aaPredicted RBP19.14■□□□□ 0.65
CCDC40-213ENST00000574933 CLUL1Q15846 466 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 SLC5A9Q2M3M2 681 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 TDRD12Q587J7 1177 aaKnown RBP19.14■□□□□ 0.65
CCDC40-213ENST00000574933 PPP1R2P3Q6NXS1 205 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 PDZD4Q76G19 769 aaPredicted RBP19.14■□□□□ 0.65
CCDC40-213ENST00000574933 PDZD8Q8NEN9 1154 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 FBXO32Q969P5 355 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 PPP1R13BQ96KQ4 1090 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 SLITRK1Q96PX8 696 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 PRDM6Q9NQX0 595 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 CDH22Q9UJ99 828 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 MAGED2Q9UNF1 606 aaPredicted RBP19.14■□□□□ 0.65
CCDC40-213ENST00000574933 NCOR1O75376 2440 aa19.14■□□□□ 0.65
CCDC40-213ENST00000574933 DDX3XO00571 662 aaKnown RBP eCLIP19.13■□□□□ 0.65
CCDC40-213ENST00000574933 PLEKP08567 350 aaPredicted RBP19.13■□□□□ 0.65
CCDC40-213ENST00000574933 GABRR2P28476 465 aa19.13■□□□□ 0.65
CCDC40-213ENST00000574933 ADIGQ0VDE8 80 aa19.13■□□□□ 0.65
CCDC40-213ENST00000574933 SMAD2Q15796 467 aaKnown RBP19.13■□□□□ 0.65
CCDC40-213ENST00000574933 ASTE1Q2TB18 679 aaPredicted RBP19.13■□□□□ 0.65
CCDC40-213ENST00000574933 PTPN20Q4JDL3 420 aa19.13■□□□□ 0.65
CCDC40-213ENST00000574933 NAA35Q5VZE5 725 aa19.13■□□□□ 0.65
CCDC40-213ENST00000574933 BHLHA9Q7RTU4 235 aa19.13■□□□□ 0.65
CCDC40-213ENST00000574933 VPS36Q86VN1 386 aa19.13■□□□□ 0.65
CCDC40-213ENST00000574933 MON1AQ86VX9 555 aa19.13■□□□□ 0.65
CCDC40-213ENST00000574933 PHF13Q86YI8 300 aaPredicted RBP19.13■□□□□ 0.65
CCDC40-213ENST00000574933 ZNF276Q8N554 614 aa19.13■□□□□ 0.65
CCDC40-213ENST00000574933 SHKBP1Q8TBC3 707 aa19.13■□□□□ 0.65
CCDC40-213ENST00000574933 IRGQQ8WZA9 623 aa19.13■□□□□ 0.65
CCDC40-213ENST00000574933 ULBP1Q9BZM6 244 aa19.13■□□□□ 0.65
CCDC40-213ENST00000574933 MIS12Q9H081 205 aa19.13■□□□□ 0.65
CCDC40-213ENST00000574933 POMKQ9H5K3 350 aa19.13■□□□□ 0.65
CCDC40-213ENST00000574933 THEGQ9P2T0 379 aa19.13■□□□□ 0.65
CCDC40-213ENST00000574933 ZMYM5Q9UJ78 669 aa19.13■□□□□ 0.65
CCDC40-213ENST00000574933 TCF20Q9UGU0 1960 aaKnown RBP19.13■□□□□ 0.65
CCDC40-213ENST00000574933 ZNF840PA6NDX5 716 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 E5RJQ4 531 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 ZBED1O96006 694 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 MYL4P12829 197 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 PFKLP17858 780 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 MMP8P22894 467 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 FSHRP23945 695 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 PSEN1P49768 467 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 DAOAP59103 153 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 ACAD10Q6JQN1 1059 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 ERICH1Q86X53 443 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 SIX6OS1Q8N1H7 587 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 SPC24Q8NBT2 197 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 MSANTD4Q8NCY6 345 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 CPA5Q8WXQ8 436 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 TCEAL4Q96EI5 215 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 ST7Q9NRC1 585 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 TRPM5Q9NZQ8 1165 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 NENFQ9UMX5 172 aa19.12■□□□□ 0.65
CCDC40-213ENST00000574933 MRPS23Q9Y3D9 190 aaKnown RBP19.12■□□□□ 0.65
CCDC40-213ENST00000574933 COL6A3P12111 3177 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 GOLGA6L6A8MZA4 724 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 NRG2O14511 850 aaPredicted RBP19.11■□□□□ 0.65
CCDC40-213ENST00000574933 PAPSS1O43252 624 aaPredicted RBP19.11■□□□□ 0.65
CCDC40-213ENST00000574933 SART1O43290 800 aaKnown RBP19.11■□□□□ 0.65
CCDC40-213ENST00000574933 USP17L7P0C7H9 530 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 DDX6P26196 483 aaKnown RBP eCLIP19.11■□□□□ 0.65
CCDC40-213ENST00000574933 SCNN1AP37088 669 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 EIF4A3P38919 411 aaKnown RBP19.11■□□□□ 0.65
CCDC40-213ENST00000574933 GSCP56915 257 aaPredicted RBP19.11■□□□□ 0.65
CCDC40-213ENST00000574933 GSDMDP57764 484 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 MRPS5P82675 430 aaKnown RBP19.11■□□□□ 0.65
CCDC40-213ENST00000574933 PTP4A2Q12974 167 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 AAK1Q2M2I8 961 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 PTCRAQ6ISU1 281 aaPredicted RBP19.11■□□□□ 0.65
CCDC40-213ENST00000574933 SCD5Q86SK9 330 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 ZDHHC17Q8IUH5 632 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 ARHGAP18Q8N392 663 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 ITFG1Q8TB96 612 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 IPO4Q8TEX9 1081 aaKnown RBP19.11■□□□□ 0.65
CCDC40-213ENST00000574933 C18orf8Q96DM3 657 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 VCPIP1Q96JH7 1222 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 GCNAQ96QF7 691 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 CHP1Q99653 195 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 TLR8Q9NR97 1041 aaKnown RBP19.11■□□□□ 0.65
CCDC40-213ENST00000574933 GMIPQ9P107 970 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 TJP2Q9UDY2 1190 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 ADAMTS1Q9UHI8 967 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 FAM50BQ9Y247 325 aa19.11■□□□□ 0.65
CCDC40-213ENST00000574933 USTQ9Y2C2 406 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms