RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 DEF6Q9H4E7 631 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 SYNCQ9H7C4 482 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 WDR6Q9NNW5 1121 aaKnown RBP17.99■□□□□ 0.47
NUP88-210ENST00000574867 CLUHO75153 1309 aa17.98■□□□□ 0.47
NUP88-210ENST00000574867 SART1O43290 800 aaKnown RBP17.98■□□□□ 0.47
NUP88-210ENST00000574867 ZBED1O96006 694 aa17.98■□□□□ 0.47
NUP88-210ENST00000574867 GZMAP12544 262 aa17.98■□□□□ 0.47
NUP88-210ENST00000574867 FECHP22830 423 aa17.98■□□□□ 0.47
NUP88-210ENST00000574867 LEXMQ3ZCV2 418 aa17.98■□□□□ 0.47
NUP88-210ENST00000574867 PTPN20Q4JDL3 420 aa17.98■□□□□ 0.47
NUP88-210ENST00000574867 ERICH1Q86X53 443 aa17.98■□□□□ 0.47
NUP88-210ENST00000574867 CPA5Q8WXQ8 436 aa17.98■□□□□ 0.47
NUP88-210ENST00000574867 SUSD6Q92537 303 aa17.98■□□□□ 0.47
NUP88-210ENST00000574867 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.98■□□□□ 0.47
NUP88-210ENST00000574867 IL21Q9HBE4 155 aa17.98■□□□□ 0.47
NUP88-210ENST00000574867 OBSL1O75147 1896 aa17.98■□□□□ 0.47
NUP88-210ENST00000574867 E5RJQ4 531 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 DDX3XO00571 662 aaKnown RBP eCLIP17.97■□□□□ 0.472e-6■■■■■ 31.8
NUP88-210ENST00000574867 MYL4P12829 197 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 LCP1P13796 627 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 GABRR2P28476 465 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 EIF4A3P38919 411 aaKnown RBP17.97■□□□□ 0.47
NUP88-210ENST00000574867 PUS10Q3MIT2 529 aaKnown RBP17.97■□□□□ 0.47
NUP88-210ENST00000574867 PM20D1Q6GTS8 502 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 PHF13Q86YI8 300 aaPredicted RBP17.97■□□□□ 0.47
NUP88-210ENST00000574867 HS6ST3Q8IZP7 471 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 SLC30A5Q8TAD4 765 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 FEZF2Q8TBJ5 459 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 IRGQQ8WZA9 623 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 ULBP1Q9BZM6 244 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 ADAMTS1Q9UHI8 967 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 USP15Q9Y4E8 981 aaPredicted RBP17.97■□□□□ 0.47
NUP88-210ENST00000574867 MMP8P22894 467 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 GABRB2P47870 512 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 TAF10Q12962 218 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 PRSS36Q5K4E3 855 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 ZDHHC17Q8IUH5 632 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 ARHGAP18Q8N392 663 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 CCDC42Q96M95 316 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 NOTCH4Q99466 2003 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 TRPM5Q9NZQ8 1165 aa17.97■□□□□ 0.47
NUP88-210ENST00000574867 GABBR2O75899 941 aa17.96■□□□□ 0.47
NUP88-210ENST00000574867 PSEN1P49768 467 aa17.96■□□□□ 0.47
NUP88-210ENST00000574867 NTHL1P78549 312 aa17.96■□□□□ 0.47
NUP88-210ENST00000574867 CBX2Q14781 532 aaPredicted RBP17.96■□□□□ 0.47
NUP88-210ENST00000574867 ACAD10Q6JQN1 1059 aa17.96■□□□□ 0.47
NUP88-210ENST00000574867 GAREM2Q75VX8 874 aa17.96■□□□□ 0.47
NUP88-210ENST00000574867 C18orf8Q96DM3 657 aa17.96■□□□□ 0.47
NUP88-210ENST00000574867 CHP1Q99653 195 aa17.96■□□□□ 0.47
NUP88-210ENST00000574867 NHEJ1Q9H9Q4 299 aaPredicted RBP17.96■□□□□ 0.47
NUP88-210ENST00000574867 TLR8Q9NR97 1041 aaKnown RBP17.96■□□□□ 0.47
NUP88-210ENST00000574867 ZMYM5Q9UJ78 669 aa17.96■□□□□ 0.47
NUP88-210ENST00000574867 STRIP2Q9ULQ0 834 aa17.96■□□□□ 0.47
NUP88-210ENST00000574867 FAM50BQ9Y247 325 aa17.96■□□□□ 0.47
NUP88-210ENST00000574867 MRPS23Q9Y3D9 190 aaKnown RBP17.96■□□□□ 0.47
NUP88-210ENST00000574867 DENND4CQ5VZ89 1909 aa17.96■□□□□ 0.46
NUP88-210ENST00000574867 MBTPS2O43462 519 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 TADA3O75528 432 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 F11P03951 625 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 ERBB2P04626 1255 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 CALB1P05937 261 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 USP17L7P0C7H9 530 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 FSHRP23945 695 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 DAOAP59103 153 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 C1QBPQ07021 282 aaKnown RBP17.95■□□□□ 0.46
NUP88-210ENST00000574867 SLC18A3Q16572 532 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 SLC5A9Q2M3M2 681 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 ASTE1Q2TB18 679 aaPredicted RBP17.95■□□□□ 0.46
NUP88-210ENST00000574867 MON1AQ86VX9 555 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 TMTC1Q8IUR5 882 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 MRPS31Q92665 395 aaKnown RBP17.95■□□□□ 0.46
NUP88-210ENST00000574867 GMIPQ9P107 970 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 THEGQ9P2T0 379 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 CDH22Q9UJ99 828 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 A0A087X0T9 212 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 PAPSS1O43252 624 aaPredicted RBP17.95■□□□□ 0.46
NUP88-210ENST00000574867 AKR1B10O60218 316 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 RTN2O75298 545 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 ZDHHC11BP0C7U3 371 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 FAM228BP0C875 321 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 DDX6P26196 483 aaKnown RBP eCLIP17.95■□□□□ 0.46
NUP88-210ENST00000574867 CCR2P41597 374 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 MRPS5P82675 430 aaKnown RBP17.95■□□□□ 0.46
NUP88-210ENST00000574867 ARHGAP15Q53QZ3 475 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 SNX30Q5VWJ9 437 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 MMS22LQ6ZRQ5 1243 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 TOGARAM2Q6ZUX3 1019 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 MON1BQ7L1V2 547 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 TMEM150AQ86TG1 271 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 CCDC170Q8IYT3 715 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 SHKBP1Q8TBC3 707 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 PDLIM2Q96JY6 352 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 BAG1Q99933 345 aaPredicted RBP17.95■□□□□ 0.46
NUP88-210ENST00000574867 TRIM62Q9BVG3 475 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 ATXN3LQ9H3M9 355 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 ADAM22Q9P0K1 906 aa17.95■□□□□ 0.46
NUP88-210ENST00000574867 DOCK6Q96HP0 2047 aa17.94■□□□□ 0.46
NUP88-210ENST00000574867 A0A1W2PRU2 124 aa17.94■□□□□ 0.46
NUP88-210ENST00000574867 GRXCR2A6NFK2 248 aa17.94■□□□□ 0.46
NUP88-210ENST00000574867 SOBPA7XYQ1 873 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms