RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CTSAP10619 480 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 DESP17661 470 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 RPL17P18621 184 aaKnown RBP14.35□□□□□ -0.11
CCDC40-209ENST00000573474 CTNNA1P35221 906 aaKnown RBP14.35□□□□□ -0.11
CCDC40-209ENST00000573474 CTNNB1P35222 781 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 FLT3P36888 993 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 PEX5P50542 639 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 DNA2P51530 1060 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 RPL10AP62906 217 aaKnown RBP14.35□□□□□ -0.11
CCDC40-209ENST00000573474 YWHAZP63104 245 aaKnown RBP14.35□□□□□ -0.11
CCDC40-209ENST00000573474 RAB33AQ14088 237 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 DDR2Q16832 855 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 CC2D1AQ6P1N0 951 aaPredicted RBP14.35□□□□□ -0.11
CCDC40-209ENST00000573474 CPNE8Q86YQ8 564 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 PSMB7Q99436 277 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 NCAPGQ9BPX3 1015 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 DDX23Q9BUQ8 820 aaKnown RBP14.35□□□□□ -0.11
CCDC40-209ENST00000573474 ZBP1Q9H171 429 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 RXFP1Q9HBX9 757 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.35□□□□□ -0.11
CCDC40-209ENST00000573474 HSFX1Q9UBD0 423 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 RNF14Q9UBS8 474 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 AFF4Q9UHB7 1163 aaKnown RBP14.35□□□□□ -0.11
CCDC40-209ENST00000573474 USP3Q9Y6I4 520 aa14.35□□□□□ -0.11
CCDC40-209ENST00000573474 NLRC5Q86WI3 1866 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 RIOK3O14730 519 aaKnown RBP14.34□□□□□ -0.11
CCDC40-209ENST00000573474 PSTPIP1O43586 416 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 DAB1O75553 588 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 RNF8O76064 485 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 ABLIM3O94929 683 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 RB1P06400 928 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 SDC4P31431 198 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 CXCR5P32302 372 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 SSR1P43307 286 aaKnown RBP14.34□□□□□ -0.11
CCDC40-209ENST00000573474 PTPN9P43378 593 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 TUFMP49411 452 aaKnown RBP14.34□□□□□ -0.11
CCDC40-209ENST00000573474 SLC5A3P53794 718 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 DUSP4Q13115 394 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 MGAT5BQ3V5L5 792 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 CCDC14Q49A88 953 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 LRRC38Q5VT99 294 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 TRNP1Q6NT89 227 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 RHOT1Q8IXI2 618 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 NUP93Q8N1F7 819 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 ZNF461Q8TAF7 563 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 COG1Q8WTW3 980 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 NDRG1Q92597 394 aaKnown RBP14.34□□□□□ -0.11
CCDC40-209ENST00000573474 KRT35Q92764 455 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 GOLGA1Q92805 767 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 FAM149B1Q96BN6 582 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 SPATA17Q96L03 361 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 CEP295NLQ96MC4 621 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 SLC2A13Q96QE2 648 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 COMMD8Q9NX08 183 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 MAFFQ9ULX9 164 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 SLC27A5Q9Y2P5 690 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.34□□□□□ -0.11
CCDC40-209ENST00000573474 PCDHA11Q9Y5I1 949 aa14.34□□□□□ -0.11
CCDC40-209ENST00000573474 YJEFN3A6XGL0 299 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 E7ENQ6 273 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 C5orf67F2Z3F1 127 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 ZNF185O15231 689 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 CXCL14O95715 111 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 DNAJB2P25686 324 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 NOS2P35228 1153 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 PCK1P35558 622 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 MATKP42679 507 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 GPR15P49685 360 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 RWDD2BP57060 319 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 TAS2R40P59535 323 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 UBE3AQ05086 875 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 CKAP4Q07065 602 aaKnown RBP14.33□□□□□ -0.12
CCDC40-209ENST00000573474 HADHQ16836 314 aaKnown RBP14.33□□□□□ -0.12
CCDC40-209ENST00000573474 CREG2Q8IUH2 290 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 DEFB106AQ8N104 65 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 TTC9BQ8N6N2 239 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 CEP112Q8N8E3 955 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 SCAMP5Q8TAC9 235 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 AUTS2Q8WXX7 1259 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 ALG3Q92685 438 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 CAPZA3Q96KX2 299 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 SAMD11Q96NU1 681 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 SEPT5Q99719 369 aaPredicted RBP14.33□□□□□ -0.12
CCDC40-209ENST00000573474 TRIM62Q9BVG3 475 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 UBE2OQ9C0C9 1292 aaKnown RBP14.33□□□□□ -0.12
CCDC40-209ENST00000573474 CARD9Q9H257 536 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 CRISPLD1Q9H336 500 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 FBXO44Q9H4M3 255 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 POPDC2Q9HBU9 364 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 IL37Q9NZH6 218 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 KIAA1671Q9BY89 1806 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 PTPRDP23468 1912 aa14.33□□□□□ -0.12
CCDC40-209ENST00000573474 GRXCR1A8MXD5 290 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 CEP104O60308 925 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 LRCH4O75427 683 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 RTN3O95197 1032 aaPredicted RBP14.32□□□□□ -0.12
CCDC40-209ENST00000573474 SLU7O95391 586 aaKnown RBP14.32□□□□□ -0.12
CCDC40-209ENST00000573474 LTFP02788 710 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 MYOGP15173 224 aa14.32□□□□□ -0.12
CCDC40-209ENST00000573474 ATF2P15336 505 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms