RNA–Protein interactions for RNA: ENST00000568561.5

NME3-211, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 1 (best)

Gene NME3, Length 813 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-211ENST00000568561 XYLT2Q9H1B5 865 aa16.51■□□□□ 0.23
NME3-211ENST00000568561 ZSCAN16Q9H4T2 348 aaPredicted RBP16.51■□□□□ 0.23
NME3-211ENST00000568561 ADH5P11766 374 aa16.5■□□□□ 0.23
NME3-211ENST00000568561 YWHAQP27348 245 aa16.5■□□□□ 0.23
NME3-211ENST00000568561 CDH8P55286 799 aa16.5■□□□□ 0.23
NME3-211ENST00000568561 TRPC3Q13507 836 aa16.5■□□□□ 0.23
NME3-211ENST00000568561 FOXD4L6Q3SYB3 417 aaPredicted RBP16.5■□□□□ 0.23
NME3-211ENST00000568561 FOXD4L3Q6VB84 417 aaPredicted RBP16.5■□□□□ 0.23
NME3-211ENST00000568561 SCAMP5Q8TAC9 235 aa16.5■□□□□ 0.23
NME3-211ENST00000568561 PIGKQ92643 395 aa16.5■□□□□ 0.23
NME3-211ENST00000568561 FBXO32Q969P5 355 aa16.5■□□□□ 0.23
NME3-211ENST00000568561 INTS4Q96HW7 963 aaKnown RBP16.5■□□□□ 0.23
NME3-211ENST00000568561 PNKPQ96T60 521 aa16.5■□□□□ 0.23
NME3-211ENST00000568561 CUEDC2Q9H467 287 aa16.5■□□□□ 0.23
NME3-211ENST00000568561 SLC39A2Q9NP94 309 aa16.5■□□□□ 0.23
NME3-211ENST00000568561 ARHGEF4Q9NR80 690 aa16.5■□□□□ 0.23
NME3-211ENST00000568561 CACNA1EQ15878 2313 aa16.5■□□□□ 0.23
NME3-211ENST00000568561 UBE4BO95155 1302 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 ATXN2Q99700 1313 aaKnown RBP16.49■□□□□ 0.23
NME3-211ENST00000568561 SLC9A3R1O14745 358 aaPredicted RBP16.49■□□□□ 0.23
NME3-211ENST00000568561 KHNYNO15037 678 aaKnown RBP16.49■□□□□ 0.23
NME3-211ENST00000568561 COCHO43405 550 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 PHACTR2O75167 634 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 ADH1CP00326 375 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 APODP05090 189 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 PPP3CCP48454 512 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 MRPS21P82921 87 aaKnown RBP16.49■□□□□ 0.23
NME3-211ENST00000568561 SHC2P98077 582 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 AMPD3Q01432 767 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 EHHADHQ08426 723 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 ZNF252P-AS1Q0IIN9 211 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 ORC1Q13415 861 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 LY6G5CQ5SRR4 150 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 SH3PXD2AQ5TCZ1 1133 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 UNC13DQ70J99 1090 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 FAM35AQ86V20 835 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 GRAMD1CQ8IYS0 662 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 NUP93Q8N1F7 819 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 NAT16Q8N8M0 369 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 IQUBQ8NA54 791 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 OLIG1Q8TAK6 271 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 HMGB4Q8WW32 186 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 WBP2Q969T9 261 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 ZFRQ96KR1 1074 aaKnown RBP16.49■□□□□ 0.23
NME3-211ENST00000568561 C7orf25Q9BPX7 421 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 MED10Q9BTT4 135 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 CCSER2Q9H7U1 834 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 BCCIPQ9P287 314 aaKnown RBP eCLIP16.49■□□□□ 0.23
NME3-211ENST00000568561 CHORDC1Q9UHD1 332 aaPredicted RBP16.49■□□□□ 0.23
NME3-211ENST00000568561 RALYQ9UKM9 306 aaKnown RBP16.49■□□□□ 0.23
NME3-211ENST00000568561 GTF3C3Q9Y5Q9 886 aa16.49■□□□□ 0.23
NME3-211ENST00000568561 ZFYVE26Q68DK2 2539 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 POLR2DO15514 142 aaKnown RBP16.48■□□□□ 0.23
NME3-211ENST00000568561 EXOC3O60645 756 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 CUTAO60888 179 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 ADAM23O75077 832 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 PPP6R2O75170 966 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 IRF1P10914 325 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 SPINK2P20155 84 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 PTGER3P43115 390 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 KIR2DL1P43626 348 aaPredicted RBP16.48■□□□□ 0.23
NME3-211ENST00000568561 IRX4P78413 519 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 FOXC1Q12948 553 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 BIRC3Q13489 604 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 ZNF699Q32M78 642 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 UAP1L1Q3KQV9 507 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 CNNM4Q6P4Q7 775 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 PAQR9Q6ZVX9 377 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 C11orf74Q86VG3 221 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 TMEFF1Q8IYR6 380 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 PHTF2Q8N3S3 785 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 SDCBP2Q9H190 292 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 TMEM9BQ9NQ34 198 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 KRT82Q9NSB4 513 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 GMIPQ9P107 970 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 ASPMQ8IZT6 3477 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 CACNA1GO43497 2377 aa16.48■□□□□ 0.23
NME3-211ENST00000568561 FAM208BQ5VWN6 2430 aa16.47■□□□□ 0.23
NME3-211ENST00000568561 TCRBV21S2A2A0A5A6 115 aa16.47■□□□□ 0.23
NME3-211ENST00000568561 K7ELQ4 463 aaPredicted RBP16.47■□□□□ 0.23
NME3-211ENST00000568561 CDX4O14627 284 aaPredicted RBP16.47■□□□□ 0.23
NME3-211ENST00000568561 TRIM24O15164 1050 aa16.47■□□□□ 0.23
NME3-211ENST00000568561 ALDH1A2O94788 518 aa16.47■□□□□ 0.23
NME3-211ENST00000568561 RTN3O95197 1032 aaPredicted RBP16.47■□□□□ 0.23
NME3-211ENST00000568561 STAU1O95793 577 aaKnown RBP16.47■□□□□ 0.23
NME3-211ENST00000568561 TOP3BO95985 862 aaKnown RBP16.47■□□□□ 0.23
NME3-211ENST00000568561 P2RY2P41231 377 aa16.47■□□□□ 0.23
NME3-211ENST00000568561 AFMP43652 599 aa16.47■□□□□ 0.23
NME3-211ENST00000568561 PGFP49763 221 aa16.47■□□□□ 0.23
NME3-211ENST00000568561 SLC5A3P53794 718 aa16.47■□□□□ 0.23
NME3-211ENST00000568561 CUL4BQ13620 913 aa16.47■□□□□ 0.23
NME3-211ENST00000568561 HECTD3Q5T447 861 aa16.47■□□□□ 0.23
NME3-211ENST00000568561 DAB2IPQ5VWQ8 1189 aa16.47■□□□□ 0.23
NME3-211ENST00000568561 DDX42Q86XP3 938 aaKnown RBP eCLIP16.47■□□□□ 0.23
NME3-211ENST00000568561 BBS7Q8IWZ6 715 aa16.47■□□□□ 0.23
NME3-211ENST00000568561 PGBD3Q8N328 593 aa16.47■□□□□ 0.23
NME3-211ENST00000568561 WHAMMQ8TF30 809 aa16.47■□□□□ 0.23
NME3-211ENST00000568561 SYAP1Q96A49 352 aaPredicted RBP16.47■□□□□ 0.23
NME3-211ENST00000568561 ERLEC1Q96DZ1 483 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms