RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 CAVIN2O95810 425 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 ADH1CP00326 375 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 F13A1P00488 732 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 ZSCAN22P10073 491 aaPredicted RBP15.85■□□□□ 0.13
CLN3-236ENST00000568558 CHRM1P11229 460 aaPredicted RBP15.85■□□□□ 0.13
CLN3-236ENST00000568558 SLC6A11P48066 632 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 AP3M2P53677 418 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 CLDN10P78369 228 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 MESP2Q0VG99 397 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 BIRC3Q13489 604 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 USP39Q53GS9 565 aaKnown RBP15.85■□□□□ 0.13
CLN3-236ENST00000568558 ZNF667Q5HYK9 610 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 RNF43Q68DV7 783 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 PAQR9Q6ZVX9 377 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 C12orf40Q86WS4 652 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 SFTPA1Q8IWL2 248 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 CCDC33Q8N5R6 958 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 MDGA1Q8NFP4 955 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 GOLGA5Q8TBA6 731 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 FBXO32Q969P5 355 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 ZFRQ96KR1 1074 aaKnown RBP15.85■□□□□ 0.13
CLN3-236ENST00000568558 KCNK16Q96T55 309 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 EDEM2Q9BV94 578 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 INVSQ9Y283 1065 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 PI4KAP42356 2102 aa15.85■□□□□ 0.13
CLN3-236ENST00000568558 USP24Q9UPU5 2620 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 E2F8A0AVK6 867 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 TNFRSF10BO14763 440 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 COCHO43405 550 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 KLRC4O43908 158 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 KRT37O76014 449 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 KAT7O95251 611 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 C4BPAP04003 597 aaKnown RBP15.84■□□□□ 0.13
CLN3-236ENST00000568558 APODP05090 189 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 ADH5P11766 374 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 PDIA4P13667 645 aaKnown RBP15.84■□□□□ 0.13
CLN3-236ENST00000568558 HNRNPLP14866 589 aaKnown RBP eCLIP15.84■□□□□ 0.13
CLN3-236ENST00000568558 PMLP29590 882 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 ME1P48163 572 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 NCOA4Q13772 614 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 N4BP2L1Q5TBK1 243 aaPredicted RBP15.84■□□□□ 0.13
CLN3-236ENST00000568558 SNX30Q5VWJ9 437 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 TMEM92Q6UXU6 159 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 SCARA5Q6ZMJ2 495 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 GRAMD1CQ8IYS0 662 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 SCAMP5Q8TAC9 235 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 ELMO3Q96BJ8 720 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 SMARCD1Q96GM5 515 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 TNIP3Q96KP6 325 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 MED10Q9BTT4 135 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 LSM14BQ9BX40 385 aaKnown RBP15.84■□□□□ 0.13
CLN3-236ENST00000568558 SDCBP2Q9H190 292 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 DMAP1Q9NPF5 467 aaPredicted RBP15.84■□□□□ 0.13
CLN3-236ENST00000568558 DMAC2Q9NW81 257 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 IL37Q9NZH6 218 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 TBC1D14Q9P2M4 693 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 SERTAD1Q9UHV2 236 aa15.84■□□□□ 0.13
CLN3-236ENST00000568558 A0A0A0MRY4 1105 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 FAM92AA1XBS5 289 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 CLSTN1O94985 981 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 VNN1O95497 513 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 ZDHHC11BP0C7U3 371 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 BCKDHBP21953 392 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 TIE1P35590 1138 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 TUBP50607 506 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 SLC5A3P53794 718 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 KDSRQ06136 332 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 STK4Q13043 487 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 HSF5Q4G112 596 aaPredicted RBP15.83■□□□□ 0.12
CLN3-236ENST00000568558 LY6G5CQ5SRR4 150 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 HECTD3Q5T447 861 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 ATL3Q6DD88 541 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 SLC9A9Q8IVB4 645 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 HSCBQ8IWL3 235 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 CEP57L1Q8IYX8 460 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 FUKQ8N0W3 1084 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 PHTF2Q8N3S3 785 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 ALLCQ8N6M5 410 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 IL17RCQ8NAC3 791 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 TXNDC5Q8NBS9 432 aaKnown RBP15.83■□□□□ 0.12
CLN3-236ENST00000568558 KIAA0895Q8NCT3 520 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 OLIG1Q8TAK6 271 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 TMEM174Q8WUU8 243 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 OTUB2Q96DC9 234 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 CCSER2Q9H7U1 834 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 ARHGEF4Q9NR80 690 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 CHORDC1Q9UHD1 332 aaPredicted RBP15.83■□□□□ 0.12
CLN3-236ENST00000568558 ANGPTL2Q9UKU9 493 aa15.83■□□□□ 0.12
CLN3-236ENST00000568558 ADAMTS9Q9P2N4 1935 aa15.82■□□□□ 0.12
CLN3-236ENST00000568558 LNP1A1A4G5 178 aa15.82■□□□□ 0.12
CLN3-236ENST00000568558 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.82■□□□□ 0.12
CLN3-236ENST00000568558 SGK1O00141 431 aa15.82■□□□□ 0.12
CLN3-236ENST00000568558 ACTN4O43707 911 aaKnown RBP15.82■□□□□ 0.12
CLN3-236ENST00000568558 ALDH1A2O94788 518 aa15.82■□□□□ 0.12
CLN3-236ENST00000568558 KCNK5O95279 499 aa15.82■□□□□ 0.12
CLN3-236ENST00000568558 KLF8O95600 359 aaPredicted RBP15.82■□□□□ 0.12
CLN3-236ENST00000568558 SLFN14P0C7P3 912 aa15.82■□□□□ 0.12
CLN3-236ENST00000568558 GRIA2P42262 883 aa15.82■□□□□ 0.12
CLN3-236ENST00000568558 KIR2DL1P43626 348 aaPredicted RBP15.82■□□□□ 0.12
CLN3-236ENST00000568558 ST3GAL2Q16842 350 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms