RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 CCDC163A0A0D9SF12 145 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 FAM170AA1A519 330 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 BICDL2A1A5D9 508 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 HEPACAM2A8MVW5 462 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 SPECC1L-ADORA2AF8WAN1 911 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 IKBKBO14920 756 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 CAVIN2O95810 425 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 HAPLN1P10915 354 aaPredicted RBP14.76□□□□□ -0.05
CLN3-235ENST00000568497 PTPN1P18031 435 aaKnown RBP14.76□□□□□ -0.05
CLN3-235ENST00000568497 FMO5P49326 533 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 CYP4F8P98187 520 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 TEAD2Q15562 447 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 ELF2Q15723 593 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 SGSM1Q2NKQ1 1148 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 IQCEQ6IPM2 695 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 TXNDC11Q6PKC3 985 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 RBM43Q6ZSC3 357 aaKnown RBP14.76□□□□□ -0.05
CLN3-235ENST00000568497 ARHGEF19Q8IW93 802 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 TMEM86AQ8N2M4 240 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 MLKLQ8NB16 471 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 WHAMMQ8TF30 809 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 PCED1BQ96HM7 432 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 ACBD6Q9BR61 282 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 RAB20Q9NX57 234 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 MAGED2Q9UNF1 606 aaPredicted RBP14.76□□□□□ -0.05
CLN3-235ENST00000568497 SLC8A2Q9UPR5 921 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 PCDHB5Q9Y5E4 795 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.76□□□□□ -0.05
CLN3-235ENST00000568497 AKAP13Q12802 2813 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 ADAMTS20P59510 1910 aa14.76□□□□□ -0.05
CLN3-235ENST00000568497 NCANO14594 1321 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 LNP1A1A4G5 178 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 ATICP31939 592 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 CTHP32929 405 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 LHX1P48742 406 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 AP3M2P53677 418 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 USP46P62068 366 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 KCNH2Q12809 1159 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 IFRD2Q12894 506 aaPredicted RBP14.75□□□□□ -0.05
CLN3-235ENST00000568497 TPD52L1Q16890 204 aaPredicted RBP14.75□□□□□ -0.05
CLN3-235ENST00000568497 UAP1L1Q3KQV9 507 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 FAM171BQ6P995 826 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 RRAGAQ7L523 313 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 DNAJB7Q7Z6W7 309 aaPredicted RBP14.75□□□□□ -0.05
CLN3-235ENST00000568497 PDZD3Q86UT5 571 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 RALGPS2Q86X27 583 aaPredicted RBP14.75□□□□□ -0.05
CLN3-235ENST00000568497 TMC8Q8IU68 726 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 SPATA2LQ8IUW3 424 aaPredicted RBP14.75□□□□□ -0.05
CLN3-235ENST00000568497 TRIM59Q8IWR1 403 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 DCP1BQ8IZD4 617 aaKnown RBP14.75□□□□□ -0.05
CLN3-235ENST00000568497 SYNPOQ8N3V7 929 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 DEFB124Q8NES8 71 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 SHKBP1Q8TBC3 707 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 E2F7Q96AV8 911 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 LRRC3Q9BY71 257 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 SMG9Q9H0W8 520 aaKnown RBP14.75□□□□□ -0.05
CLN3-235ENST00000568497 TMEM9BQ9NQ34 198 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 AJAP1Q9UKB5 411 aaPredicted RBP14.75□□□□□ -0.05
CLN3-235ENST00000568497 KLK13Q9UKR3 277 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 NEUROG3Q9Y4Z2 214 aa14.75□□□□□ -0.05
CLN3-235ENST00000568497 A0A1W2PRU2 124 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 CHADO15335 359 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 TACC1O75410 805 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 BEST1O76090 585 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 STAU1O95793 577 aaKnown RBP14.74□□□□□ -0.05
CLN3-235ENST00000568497 MBD3O95983 291 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 CSRP1P21291 193 aaKnown RBP14.74□□□□□ -0.05
CLN3-235ENST00000568497 ADORA2BP29275 332 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 MTIF2P46199 727 aaKnown RBP14.74□□□□□ -0.05
CLN3-235ENST00000568497 ALDH1A3P47895 512 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 TYRO3Q06418 890 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 CCINQ13939 588 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 PLK5Q496M5 336 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 PAQR9Q6ZVX9 377 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 B3GALNT2Q8NCR0 500 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 FBXL13Q8NEE6 735 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 ZC3H10Q96K80 434 aaKnown RBP14.74□□□□□ -0.05
CLN3-235ENST00000568497 ZNF512Q96ME7 567 aaPredicted RBP14.74□□□□□ -0.05
CLN3-235ENST00000568497 MED10Q9BTT4 135 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 NIF3L1Q9GZT8 377 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 VRTNQ9H8Y1 702 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 TAB2Q9NYJ8 693 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 CDH9Q9ULB4 789 aa14.74□□□□□ -0.05
CLN3-235ENST00000568497 NBEAQ8NFP9 2946 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 PTPRDP23468 1912 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 PCSK1P29120 753 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 GBP1P32455 592 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 GTF2H1P32780 548 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 PPP1R2P41236 205 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 EPHB3P54753 998 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 PKN3Q6P5Z2 889 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 SASS6Q6UVJ0 657 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 GAREM2Q75VX8 874 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 LEMD2Q8NC56 503 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 LMO3Q8TAP4 145 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 MYCBPAPQ8TBZ2 947 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 KCNK16Q96T55 309 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 GPR88Q9GZN0 384 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 ASAH2Q9NR71 780 aa14.73□□□□□ -0.05
CLN3-235ENST00000568497 GTSE1Q9NYZ3 720 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms