RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 FAM124BQ9H5Z6 455 aaPredicted RBP15.9■□□□□ 0.14
VPS39-210ENST00000568357 HPS4Q9NQG7 708 aa15.9■□□□□ 0.14
VPS39-210ENST00000568357 COMMD8Q9NX08 183 aa15.9■□□□□ 0.14
VPS39-210ENST00000568357 DLL3Q9NYJ7 618 aa15.9■□□□□ 0.14
VPS39-210ENST00000568357 GMIPQ9P107 970 aa15.9■□□□□ 0.14
VPS39-210ENST00000568357 NDRG2Q9UN36 371 aaKnown RBP15.9■□□□□ 0.14
VPS39-210ENST00000568357 ARHGAP26Q9UNA1 814 aa15.9■□□□□ 0.14
VPS39-210ENST00000568357 MRPS17Q9Y2R5 130 aaKnown RBP15.9■□□□□ 0.14
VPS39-210ENST00000568357 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.9■□□□□ 0.14
VPS39-210ENST00000568357 SPECC1L-ADORA2AF8WAN1 911 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 AFPP02771 609 aaKnown RBP15.89■□□□□ 0.13
VPS39-210ENST00000568357 ZDHHC11BP0C7U3 371 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 CCDC192P0DO97 292 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 ARSAP15289 507 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 PFKLP17858 780 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 SLC7A9P82251 487 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 MTF1Q14872 753 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 SNX30Q5VWJ9 437 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 CC2D1AQ6P1N0 951 aaPredicted RBP15.89■□□□□ 0.13
VPS39-210ENST00000568357 TXNDC11Q6PKC3 985 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 CREBRFQ8IUR6 639 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 SH3RF2Q8TEC5 729 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 OVCA2Q8WZ82 227 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 KAT5Q92993 513 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 NT5C1BQ96P26 610 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 DNAI2Q9GZS0 605 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 LINC00597Q9H2U6 94 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 C8orf33Q9H7E9 229 aaPredicted RBP15.89■□□□□ 0.13
VPS39-210ENST00000568357 PTPRDP23468 1912 aa15.89■□□□□ 0.13
VPS39-210ENST00000568357 CEP250Q9BV73 2442 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 RNF225M0QZC1 329 aaPredicted RBP15.88■□□□□ 0.13
VPS39-210ENST00000568357 LEFTY2O00292 366 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 TCF3P15923 654 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 ACO1P21399 889 aaKnown RBP15.88■□□□□ 0.13
VPS39-210ENST00000568357 CTHP32929 405 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 PDE6CP51160 858 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 CETN1Q12798 172 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 USP4Q13107 963 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 RUNX3Q13761 415 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 ITPRIPL2Q3MIP1 535 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 ARHGAP17Q68EM7 881 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 RRAGAQ7L523 313 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 RALGPS2Q86X27 583 aaPredicted RBP15.88■□□□□ 0.13
VPS39-210ENST00000568357 C1orf210Q8IVY1 113 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 ARHGEF19Q8IW93 802 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 DCLK2Q8N568 766 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 PDZD8Q8NEN9 1154 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 OSCP1Q8WVF1 389 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 CHFRQ96EP1 664 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 CNOT6LQ96LI5 555 aaKnown RBP15.88■□□□□ 0.13
VPS39-210ENST00000568357 HINFPQ9BQA5 517 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 FBXO44Q9H4M3 255 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 CCSER2Q9H7U1 834 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 LMAN1LQ9HAT1 526 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 DUS2Q9NX74 493 aaKnown RBP15.88■□□□□ 0.13
VPS39-210ENST00000568357 SMPD4Q9NXE4 827 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 WNT6Q9Y6F9 365 aa15.88■□□□□ 0.13
VPS39-210ENST00000568357 NCAM2O15394 837 aa15.87■□□□□ 0.13
VPS39-210ENST00000568357 COCHO43405 550 aa15.87■□□□□ 0.13
VPS39-210ENST00000568357 CHRNB1P11230 501 aa15.87■□□□□ 0.13
VPS39-210ENST00000568357 TBXAS1P24557 533 aaPredicted RBP15.87■□□□□ 0.13
VPS39-210ENST00000568357 RPS9P46781 194 aaKnown RBP15.87■□□□□ 0.13
VPS39-210ENST00000568357 KIF11P52732 1056 aa15.87■□□□□ 0.13
VPS39-210ENST00000568357 YWHAEP62258 255 aaKnown RBP15.87■□□□□ 0.13
VPS39-210ENST00000568357 PDGFRLQ15198 375 aa15.87■□□□□ 0.13
VPS39-210ENST00000568357 HECTD3Q5T447 861 aa15.87■□□□□ 0.13
VPS39-210ENST00000568357 MAML2Q8IZL2 1156 aaPredicted RBP15.87■□□□□ 0.13
VPS39-210ENST00000568357 PPM1KQ8N3J5 372 aa15.87■□□□□ 0.13
VPS39-210ENST00000568357 ANKRD52Q8NB46 1076 aa15.87■□□□□ 0.13
VPS39-210ENST00000568357 PNPLA8Q9NP80 782 aa15.87■□□□□ 0.13
VPS39-210ENST00000568357 OSER1Q9NX31 292 aa15.87■□□□□ 0.13
VPS39-210ENST00000568357 SCML2Q9UQR0 700 aa15.87■□□□□ 0.13
VPS39-210ENST00000568357 CPQQ9Y646 472 aa15.87■□□□□ 0.13
VPS39-210ENST00000568357 COL4A2P08572 1712 aa15.87■□□□□ 0.13
VPS39-210ENST00000568357 GREB1Q4ZG55 1949 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 CYP26A1O43174 497 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 MBL2P11226 248 aaPredicted RBP15.86■□□□□ 0.13
VPS39-210ENST00000568357 ERCC5P28715 1186 aaPredicted RBP15.86■□□□□ 0.13
VPS39-210ENST00000568357 PON2Q15165 354 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 EML3Q32P44 896 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 TMEM270Q6UE05 265 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 PIGZQ86VD9 579 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 TTC30AQ86WT1 665 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 TFAP2BQ92481 460 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 MSANTD3Q96H12 275 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 ZFRQ96KR1 1074 aaKnown RBP15.86■□□□□ 0.13
VPS39-210ENST00000568357 KREMEN1Q96MU8 473 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 ZSWIM1Q9BR11 485 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 UBXN6Q9BZV1 441 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 INTS2Q9H0H0 1204 aaKnown RBP15.86■□□□□ 0.13
VPS39-210ENST00000568357 ECT2Q9H8V3 914 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 NMUR1Q9HB89 426 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 SPATA6Q9NWH7 488 aaPredicted RBP15.86■□□□□ 0.13
VPS39-210ENST00000568357 PCDHB4Q9Y5E5 795 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 USP3Q9Y6I4 520 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 OTOGLQ3ZCN5 2332 aa15.86■□□□□ 0.13
VPS39-210ENST00000568357 NUP210Q8TEM1 1887 aaPredicted RBP15.86■□□□□ 0.13
VPS39-210ENST00000568357 TPRP12270 2363 aaKnown RBP15.85■□□□□ 0.13
VPS39-210ENST00000568357 FRYLO94915 3013 aa15.85■□□□□ 0.13
VPS39-210ENST00000568357 OBSL1O75147 1896 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms