RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 RFX6Q8HWS3 928 aa7.4□□□□□ -1.23
SMG1-215ENST00000568239 THEM5Q8N1Q8 247 aa7.4□□□□□ -1.23
SMG1-215ENST00000568239 MYCBPAPQ8TBZ2 947 aa7.4□□□□□ -1.23
SMG1-215ENST00000568239 UROC1Q96N76 676 aa7.4□□□□□ -1.23
SMG1-215ENST00000568239 RUNDC3BQ96NL0 473 aa7.4□□□□□ -1.23
SMG1-215ENST00000568239 PEBP4Q96S96 227 aa7.4□□□□□ -1.23
SMG1-215ENST00000568239 TMEM209Q96SK2 561 aa7.4□□□□□ -1.23
SMG1-215ENST00000568239 GPATCH2LQ9NWQ4 482 aa7.4□□□□□ -1.23
SMG1-215ENST00000568239 HPCAL4Q9UM19 191 aa7.4□□□□□ -1.23
SMG1-215ENST00000568239 hCG_1818297A0A087WSY0 165 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 ENPP3O14638 875 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 CAPN9O14815 690 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 OAS2P29728 719 aaKnown RBP7.39□□□□□ -1.23
SMG1-215ENST00000568239 CYP2C18P33260 490 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 AARSP49588 968 aaKnown RBP eCLIP7.39□□□□□ -1.23
SMG1-215ENST00000568239 CACNA2D1P54289 1103 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 TRIM60Q495X7 471 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 DUPD1Q68J44 220 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 ZNF365Q70YC5 407 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 CTU1Q7Z7A3 348 aaKnown RBP7.39□□□□□ -1.23
SMG1-215ENST00000568239 PRUNE1Q86TP1 453 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 DEFB106AQ8N104 65 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 TSEN2Q8NCE0 465 aaKnown RBP7.39□□□□□ -1.23
SMG1-215ENST00000568239 ATL2Q8NHH9 583 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.39□□□□□ -1.23
SMG1-215ENST00000568239 RIN2Q8WYP3 895 aaPredicted RBP7.39□□□□□ -1.23
SMG1-215ENST00000568239 KHSRPQ92945 711 aaKnown RBP eCLIP7.39□□□□□ -1.232e-7■■■□□ 16.9
SMG1-215ENST00000568239 MYLPFQ96A32 169 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 FMO2Q99518 471 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 HOMER3Q9NSC5 361 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 TMEM161AQ9NX61 479 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 KANSL3Q9P2N6 904 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 FEZ2Q9UHY8 353 aaPredicted RBP7.39□□□□□ -1.23
SMG1-215ENST00000568239 DSEQ9UL01 958 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 DNPEPQ9ULA0 475 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 OGDHLQ9ULD0 1010 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 ATP11BQ9Y2G3 1177 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 SCN5AQ14524 2016 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 NT5C1B-RDH14C9J2C7 533 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 HSF2BPO75031 334 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 IFNB1P01574 187 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 FAM163BP0C2L3 166 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 OR4Q2P0C623 313 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 USP17L7P0C7H9 530 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 ECHS1P30084 290 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 PCK1P35558 622 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 ADCY8P40145 1251 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 RPL21P46778 160 aaKnown RBP7.39□□□□□ -1.23
SMG1-215ENST00000568239 COPS2P61201 443 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 TSPY1Q01534 308 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 TLE2Q04725 743 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 CALCOCO2Q13137 446 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 MMRN1Q13201 1228 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 BYSLQ13895 437 aaKnown RBP7.39□□□□□ -1.23
SMG1-215ENST00000568239 GPNMBQ14956 572 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 CCNG2Q16589 344 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 PLEKHG4Q58EX7 1191 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 ZC3H12AQ5D1E8 599 aaKnown RBP7.39□□□□□ -1.23
SMG1-215ENST00000568239 EFHC1Q5JVL4 640 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 CD300LGQ6UXG3 332 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 SLC26A9Q7LBE3 791 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 GOLGA6L1Q8N7Z2 621 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 C12orf50Q8NA57 414 aaPredicted RBP7.39□□□□□ -1.23
SMG1-215ENST00000568239 OR10T2Q8NGX3 314 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 FBXO25Q8TCJ0 367 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 GRK7Q8WTQ7 553 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 UBLCP1Q8WVY7 318 aaPredicted RBP7.39□□□□□ -1.23
SMG1-215ENST00000568239 CAVIN3Q969G5 261 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 SMARCD1Q96GM5 515 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 SMOQ99835 787 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 ACBD6Q9BR61 282 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.39□□□□□ -1.231e-10■■□□□ 11.5
SMG1-215ENST00000568239 HCSTQ9UBK5 93 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 TTC3P53804 2025 aa7.39□□□□□ -1.23
SMG1-215ENST00000568239 PITPNM1O00562 1244 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 GGCXP38435 758 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 PBX3P40426 434 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 SULT1E1P49888 294 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 YWHAZP63104 245 aaKnown RBP7.38□□□□□ -1.23
SMG1-215ENST00000568239 FAM189BP81408 668 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 MRPS5P82675 430 aaKnown RBP7.38□□□□□ -1.23
SMG1-215ENST00000568239 DHX9Q08211 1270 aaKnown RBP7.38□□□□□ -1.23
SMG1-215ENST00000568239 NME3Q13232 169 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 INTS6LQ5JSJ4 861 aaKnown RBP7.38□□□□□ -1.23
SMG1-215ENST00000568239 CFAP58Q5T655 872 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 SLC39A5Q6ZMH5 540 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 GPRIN1Q7Z2K8 1008 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 LRRTM3Q86VH5 581 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 CCDC25Q86WR0 208 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 COLGALT2Q8IYK4 626 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 DIS3LQ8TF46 1054 aaKnown RBP7.38□□□□□ -1.23
SMG1-215ENST00000568239 RTP3Q9BQQ7 232 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 TMEM121Q9BTD3 319 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 ULBP1Q9BZM6 244 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 C10orf88Q9H8K7 445 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 TMEM30AQ9NV96 361 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 TMLHEQ9NVH6 421 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 PCDH10Q9P2E7 1040 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 ATP8A1Q9Y2Q0 1164 aa7.38□□□□□ -1.23
SMG1-215ENST00000568239 ARHGEF37A1IGU5 675 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms