RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 APBB3O95704 486 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 ZNF806P0C7X5 589 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 P4HA1P13674 534 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 SLC5A3P53794 718 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 KRT85P78386 507 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 CEP135Q66GS9 1140 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 RHBDF2Q6PJF5 856 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 DDX42Q86XP3 938 aaKnown RBP eCLIP17.05■□□□□ 0.32
CLN3-229ENST00000567963 FUKQ8N0W3 1084 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 CRYBG2Q8N1P7 616 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 USP33Q8TEY7 942 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 TAF4BQ92750 862 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 DMAP1Q9NPF5 467 aaPredicted RBP17.05■□□□□ 0.32
CLN3-229ENST00000567963 COMMD8Q9NX08 183 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 FRMD4BQ9Y2L6 1034 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 FAM237AA0A1B0GTK4 181 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 FAM92AA1XBS5 289 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 ANTXRLA6NF34 631 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 SCAMP3O14828 347 aaKnown RBP17.05■□□□□ 0.32
CLN3-229ENST00000567963 CALUO43852 315 aaPredicted RBP17.05■□□□□ 0.32
CLN3-229ENST00000567963 AP1G2O75843 785 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 SYKP43405 635 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 NDUFA8P51970 172 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 NDST1P52848 882 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 SEC13P55735 322 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 CCDC6Q16204 474 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 PLK5Q496M5 336 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 C2orf27AQ580R0 203 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 C1orf220Q5T0J3 134 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 HECTD3Q5T447 861 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 ZFRQ96KR1 1074 aaKnown RBP17.05■□□□□ 0.32
CLN3-229ENST00000567963 TBC1D14Q9P2M4 693 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 MYOFQ9NZM1 2061 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 E2F8A0AVK6 867 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 MAPK13O15264 365 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 BEST1O76090 585 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 RHOBTB3O94955 611 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 KIF20AO95235 890 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 ASS1P00966 412 aaKnown RBP17.04■□□□□ 0.32
CLN3-229ENST00000567963 ZDHHC11BP0C7U3 371 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 EIF2DP41214 584 aaKnown RBP17.04■□□□□ 0.32
CLN3-229ENST00000567963 SLC6A11P48066 632 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 TUBP50607 506 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 SF3A2Q15428 464 aaKnown RBP17.04■□□□□ 0.32
CLN3-229ENST00000567963 PLA2G2CQ5R387 149 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 SPOPLQ6IQ16 392 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 UNC93AQ86WB7 457 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 ZMIZ2Q8NF64 920 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 PNKPQ96T60 521 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 SMOQ99835 787 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 DUSP15Q9H1R2 295 aaPredicted RBP17.04■□□□□ 0.32
CLN3-229ENST00000567963 CCSER2Q9H7U1 834 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 CSNK1G1Q9HCP0 422 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 KRT82Q9NSB4 513 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 HMGXB4Q9UGU5 601 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 PCDHGA5Q9Y5G8 931 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 NCOR2Q9Y618 2525 aa17.04■□□□□ 0.32
CLN3-229ENST00000567963 MYH10P35580 1976 aa17.03■□□□□ 0.32
CLN3-229ENST00000567963 A0A0A0MRY4 1105 aa17.03■□□□□ 0.32
CLN3-229ENST00000567963 DCLK1O15075 740 aa17.03■□□□□ 0.32
CLN3-229ENST00000567963 PRR29P0C7W0 189 aa17.03■□□□□ 0.32
CLN3-229ENST00000567963 CCDC130P13994 396 aa17.03■□□□□ 0.32
CLN3-229ENST00000567963 ASPAP45381 313 aa17.03■□□□□ 0.32
CLN3-229ENST00000567963 VAMP7P51809 220 aa17.03■□□□□ 0.32
CLN3-229ENST00000567963 DGKEP52429 567 aa17.03■□□□□ 0.32
CLN3-229ENST00000567963 DPYDQ12882 1025 aa17.03■□□□□ 0.32
CLN3-229ENST00000567963 ORC1Q13415 861 aa17.03■□□□□ 0.32
CLN3-229ENST00000567963 NFIL3Q16649 462 aa17.03■□□□□ 0.32
CLN3-229ENST00000567963 AASDHQ4L235 1098 aaPredicted RBP17.03■□□□□ 0.32
CLN3-229ENST00000567963 C12orf29Q8N999 325 aa17.03■□□□□ 0.32
CLN3-229ENST00000567963 TSTD1Q8NFU3 115 aa17.03■□□□□ 0.32
CLN3-229ENST00000567963 SLC2A14Q8TDB8 520 aa17.03■□□□□ 0.32
CLN3-229ENST00000567963 OTUB2Q96DC9 234 aa17.03■□□□□ 0.32
CLN3-229ENST00000567963 GMIPQ9P107 970 aa17.03■□□□□ 0.32
CLN3-229ENST00000567963 ADH1CP00326 375 aa17.02■□□□□ 0.32
CLN3-229ENST00000567963 HLA-DRAP01903 254 aa17.02■□□□□ 0.32
CLN3-229ENST00000567963 NR2F2P24468 414 aa17.02■□□□□ 0.32
CLN3-229ENST00000567963 PIK3CAP42336 1068 aa17.02■□□□□ 0.32
CLN3-229ENST00000567963 MAP3K7CLP57077 242 aa17.02■□□□□ 0.32
CLN3-229ENST00000567963 MRPS21P82921 87 aaKnown RBP17.02■□□□□ 0.32
CLN3-229ENST00000567963 MESP2Q0VG99 397 aa17.02■□□□□ 0.32
CLN3-229ENST00000567963 RASSF3Q86WH2 238 aa17.02■□□□□ 0.32
CLN3-229ENST00000567963 C12orf40Q86WS4 652 aa17.02■□□□□ 0.32
CLN3-229ENST00000567963 SFTPA1Q8IWL2 248 aa17.02■□□□□ 0.32
CLN3-229ENST00000567963 C12orf50Q8NA57 414 aaPredicted RBP17.02■□□□□ 0.32
CLN3-229ENST00000567963 CCDC47Q96A33 483 aaKnown RBP17.02■□□□□ 0.32
CLN3-229ENST00000567963 DUSP9Q99956 384 aaKnown RBP17.02■□□□□ 0.32
CLN3-229ENST00000567963 FBXO44Q9H4M3 255 aa17.02■□□□□ 0.32
CLN3-229ENST00000567963 RXFP3Q9NSD7 469 aa17.02■□□□□ 0.32
CLN3-229ENST00000567963 MMP17Q9ULZ9 603 aa17.02■□□□□ 0.32
CLN3-229ENST00000567963 MAPK8IP1Q9UQF2 711 aa17.02■□□□□ 0.32
CLN3-229ENST00000567963 SH3BP1Q9Y3L3 701 aa17.02■□□□□ 0.32
CLN3-229ENST00000567963 RHOBTB1O94844 696 aa17.01■□□□□ 0.31
CLN3-229ENST00000567963 KAT7O95251 611 aa17.01■□□□□ 0.31
CLN3-229ENST00000567963 ADH5P11766 374 aa17.01■□□□□ 0.31
CLN3-229ENST00000567963 MPLP40238 635 aa17.01■□□□□ 0.31
CLN3-229ENST00000567963 PGFP49763 221 aa17.01■□□□□ 0.31
CLN3-229ENST00000567963 LIMK1P53667 647 aa17.01■□□□□ 0.31
CLN3-229ENST00000567963 ELF2Q15723 593 aa17.01■□□□□ 0.31
CLN3-229ENST00000567963 CRY1Q16526 586 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms