RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 CLEC20AQ6ZU45 233 aa19.46■□□□□ 0.71
CLN3-221ENST00000566057 GPRIN1Q7Z2K8 1008 aa19.46■□□□□ 0.71
CLN3-221ENST00000566057 OVCA2Q8WZ82 227 aa19.46■□□□□ 0.71
CLN3-221ENST00000566057 FAXDC2Q96IV6 333 aa19.46■□□□□ 0.71
CLN3-221ENST00000566057 CEP63Q96MT8 703 aa19.46■□□□□ 0.71
CLN3-221ENST00000566057 ECT2Q9H8V3 914 aa19.46■□□□□ 0.71
CLN3-221ENST00000566057 FBRSL1Q9HCM7 1045 aaKnown RBP19.46■□□□□ 0.71
CLN3-221ENST00000566057 PRMT8Q9NR22 394 aaPredicted RBP19.46■□□□□ 0.71
CLN3-221ENST00000566057 GMIPQ9P107 970 aa19.46■□□□□ 0.71
CLN3-221ENST00000566057 CTNND2Q9UQB3 1225 aa19.46■□□□□ 0.71
CLN3-221ENST00000566057 GPR179Q6PRD1 2367 aa19.46■□□□□ 0.71
CLN3-221ENST00000566057 HHLA1C9JL84 531 aa19.45■□□□□ 0.7
CLN3-221ENST00000566057 FAM200BP0CF97 657 aa19.45■□□□□ 0.7
CLN3-221ENST00000566057 PPP1R2P41236 205 aa19.45■□□□□ 0.7
CLN3-221ENST00000566057 STX17P56962 302 aa19.45■□□□□ 0.7
CLN3-221ENST00000566057 LRRC32Q14392 662 aa19.45■□□□□ 0.7
CLN3-221ENST00000566057 PPP1R26Q5T8A7 1209 aaPredicted RBP19.45■□□□□ 0.7
CLN3-221ENST00000566057 SNX30Q5VWJ9 437 aa19.45■□□□□ 0.7
CLN3-221ENST00000566057 PDZD8Q8NEN9 1154 aa19.45■□□□□ 0.7
CLN3-221ENST00000566057 HEXIM2Q96MH2 286 aaKnown RBP19.45■□□□□ 0.7
CLN3-221ENST00000566057 METTL14Q9HCE5 456 aaKnown RBP19.45■□□□□ 0.7
CLN3-221ENST00000566057 COMMD8Q9NX08 183 aa19.45■□□□□ 0.7
CLN3-221ENST00000566057 SMPD4Q9NXE4 827 aa19.45■□□□□ 0.7
CLN3-221ENST00000566057 CPQQ9Y646 472 aa19.45■□□□□ 0.7
CLN3-221ENST00000566057 KIAA1549LQ6ZVL6 1849 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 TRDMT1O14717 391 aaKnown RBP19.44■□□□□ 0.7
CLN3-221ENST00000566057 COCHO43405 550 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 ZDHHC11BP0C7U3 371 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 GJA4P35212 333 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 IFNAR2P48551 515 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 RAD23BP54727 409 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 TMEM196Q5HYL7 178 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 DGKKQ5KSL6 1271 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 FSTL4Q6MZW2 842 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 SLC4A11Q8NBS3 891 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 NELL1Q92832 810 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 ATP2A3Q93084 1043 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 JAKMIP2Q96AA8 810 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 IER2Q9BTL4 223 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 CCSER2Q9H7U1 834 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 C2orf42Q9NWW7 574 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 KIAA1468Q9P260 1216 aa19.44■□□□□ 0.7
CLN3-221ENST00000566057 SCAMP3O14828 347 aaKnown RBP19.43■□□□□ 0.7
CLN3-221ENST00000566057 MBL2P11226 248 aaPredicted RBP19.43■□□□□ 0.7
CLN3-221ENST00000566057 TDGF1P13385 188 aa19.43■□□□□ 0.7
CLN3-221ENST00000566057 TRIM21P19474 475 aaKnown RBP19.43■□□□□ 0.7
CLN3-221ENST00000566057 FMO5P49326 533 aa19.43■□□□□ 0.7
CLN3-221ENST00000566057 GALK1P51570 392 aa19.43■□□□□ 0.7
CLN3-221ENST00000566057 SATB1Q01826 763 aa19.43■□□□□ 0.7
CLN3-221ENST00000566057 LRMPQ12912 555 aa19.43■□□□□ 0.7
CLN3-221ENST00000566057 CCDC40Q4G0X9 1142 aa19.43■□□□□ 0.7
CLN3-221ENST00000566057 HECTD3Q5T447 861 aa19.43■□□□□ 0.7
CLN3-221ENST00000566057 FOXR2Q6PJQ5 311 aa19.43■□□□□ 0.7
CLN3-221ENST00000566057 SPEM1Q8N4L4 309 aa19.43■□□□□ 0.7
CLN3-221ENST00000566057 CPA6Q8N4T0 437 aa19.43■□□□□ 0.7
CLN3-221ENST00000566057 TMEM176AQ96HP8 235 aa19.43■□□□□ 0.7
CLN3-221ENST00000566057 ZFRQ96KR1 1074 aaKnown RBP19.43■□□□□ 0.7
CLN3-221ENST00000566057 DUSP16Q9BY84 665 aa19.43■□□□□ 0.7
CLN3-221ENST00000566057 BICDL2A1A5D9 508 aa19.42■□□□□ 0.7
CLN3-221ENST00000566057 CCR3P51677 355 aa19.42■□□□□ 0.7
CLN3-221ENST00000566057 PAK1Q13153 545 aa19.42■□□□□ 0.7
CLN3-221ENST00000566057 CUL2Q13617 745 aa19.42■□□□□ 0.7
CLN3-221ENST00000566057 ZC3H14Q6PJT7 736 aaKnown RBP19.42■□□□□ 0.7
CLN3-221ENST00000566057 TTC39CQ8N584 583 aa19.42■□□□□ 0.7
CLN3-221ENST00000566057 ZBTB44Q8NCP5 570 aa19.42■□□□□ 0.7
CLN3-221ENST00000566057 SEMA4AQ9H3S1 761 aa19.42■□□□□ 0.7
CLN3-221ENST00000566057 FBXO44Q9H4M3 255 aa19.42■□□□□ 0.7
CLN3-221ENST00000566057 OSER1Q9NX31 292 aa19.42■□□□□ 0.7
CLN3-221ENST00000566057 ZSCAN32Q9NX65 697 aa19.42■□□□□ 0.7
CLN3-221ENST00000566057 CFAP97Q9P2B7 532 aa19.42■□□□□ 0.7
CLN3-221ENST00000566057 SCML2Q9UQR0 700 aa19.42■□□□□ 0.7
CLN3-221ENST00000566057 CYP26A1O43174 497 aa19.41■□□□□ 0.7
CLN3-221ENST00000566057 EGFP01133 1207 aa19.41■□□□□ 0.7
CLN3-221ENST00000566057 ACO1P21399 889 aaKnown RBP19.41■□□□□ 0.7
CLN3-221ENST00000566057 HOXC13P31276 330 aa19.41■□□□□ 0.7
CLN3-221ENST00000566057 ANP32AP39687 249 aaKnown RBP19.41■□□□□ 0.7
CLN3-221ENST00000566057 CXCL12P48061 93 aa19.41■□□□□ 0.7
CLN3-221ENST00000566057 GRSF1Q12849 480 aaKnown RBP eCLIP19.41■□□□□ 0.7
CLN3-221ENST00000566057 PKN3Q6P5Z2 889 aa19.41■□□□□ 0.7
CLN3-221ENST00000566057 ADGRG2Q8IZP9 1017 aa19.41■□□□□ 0.7
CLN3-221ENST00000566057 SYNPOQ8N3V7 929 aa19.41■□□□□ 0.7
CLN3-221ENST00000566057 WBP2Q969T9 261 aa19.41■□□□□ 0.7
CLN3-221ENST00000566057 P2RY13Q9BPV8 354 aa19.41■□□□□ 0.7
CLN3-221ENST00000566057 SRRTQ9BXP5 876 aaKnown RBP19.41■□□□□ 0.7
CLN3-221ENST00000566057 FAM124BQ9H5Z6 455 aaPredicted RBP19.41■□□□□ 0.7
CLN3-221ENST00000566057 PCDHGA2Q9Y5H1 932 aa19.41■□□□□ 0.7
CLN3-221ENST00000566057 PMM2O15305 246 aa19.4■□□□□ 0.7
CLN3-221ENST00000566057 TBX18O95935 607 aa19.4■□□□□ 0.7
CLN3-221ENST00000566057 LMNAP02545 664 aaKnown RBP19.4■□□□□ 0.7
CLN3-221ENST00000566057 TUBP50607 506 aa19.4■□□□□ 0.7
CLN3-221ENST00000566057 KIF11P52732 1056 aa19.4■□□□□ 0.7
CLN3-221ENST00000566057 AMPD2Q01433 879 aa19.4■□□□□ 0.7
CLN3-221ENST00000566057 GAB4Q2WGN9 574 aa19.4■□□□□ 0.7
CLN3-221ENST00000566057 UBR7Q8N806 425 aa19.4■□□□□ 0.7
CLN3-221ENST00000566057 TRIML1Q8N9V2 468 aa19.4■□□□□ 0.7
CLN3-221ENST00000566057 LMO3Q8TAP4 145 aa19.4■□□□□ 0.7
CLN3-221ENST00000566057 ATRIPQ8WXE1 791 aa19.4■□□□□ 0.7
CLN3-221ENST00000566057 EZH1Q92800 747 aaPredicted RBP19.4■□□□□ 0.7
CLN3-221ENST00000566057 MED15Q96RN5 788 aa19.4■□□□□ 0.7
CLN3-221ENST00000566057 DNAI2Q9GZS0 605 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms