RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 ROR1Q01973 937 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 MAPRE1Q15691 268 aaKnown RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 FAM172AQ8WUF8 416 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 FAM118BQ9BPY3 351 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 CINPQ9BW66 212 aaPredicted RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 SEMA4AQ9H3S1 761 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ZNF224Q9NZL3 707 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ZSCAN5BA6NJL1 495 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 TLR3O15455 904 aaKnown RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 CHKAP35790 457 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ABCB5Q2M3G0 1257 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 TRIM71Q2Q1W2 868 aaKnown RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 KCNK18Q7Z418 384 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 C8orf59Q8N0T1 100 aaPredicted RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 GJA10Q969M2 543 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 HSPBAP1Q96EW2 488 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 MRPL9Q9BYD2 267 aaKnown RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 TRIM9Q9C026 710 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ACAD9Q9H845 621 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 SP140LQ9H930 580 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ALG13Q9NP73 1137 aaKnown RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 NAGPAQ9UK23 515 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ITGA11Q9UKX5 1188 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 KIAA1024Q9UPX6 916 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 MYPNQ86TC9 1320 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 MYH6P13533 1939 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 TYW5A2RUC4 315 aaKnown RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 LOC110117498-PIK3R3F6TDL0 507 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ZBTB39O15060 712 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 EFCAB14O75071 495 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 UCHL3P15374 230 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 CRABP2P29373 138 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 PLS1Q14651 629 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 KNOP1Q1ED39 458 aaKnown RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 TTC23Q5W5X9 447 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 C3orf62Q6ZUJ4 267 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 PLEKHM3Q6ZWE6 761 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 PIK3R3Q92569 461 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 C9orf72Q96LT7 481 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 MTG1Q9BT17 334 aaPredicted RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 PNPLA8Q9NP80 782 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ABCB10Q9NRK6 738 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ZBTB5O15062 677 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 FTLP02792 175 aaPredicted RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 UGP2Q16851 508 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 HABP4Q5JVS0 413 aaKnown RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 LRRC8DQ7L1W4 858 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 DHFR2Q86XF0 187 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 RAD54LQ92698 747 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 VPS33AQ96AX1 596 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 C18orf8Q96DM3 657 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 RBBP8Q99708 897 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 HPS4Q9NQG7 708 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ZC3H7BQ9UGR2 993 aaKnown RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 UGGT1Q9NYU2 1555 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 ATP5J2-PTCD1G3V325 749 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 FOXN1O15353 648 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 ECE2O60344 883 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 PTCD1O75127 700 aaKnown RBP6.46□□□□□ -1.37
CLK3-212ENST00000563418 TSHRP16473 764 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 ACTR3P61158 418 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 PPIL2Q13356 520 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 DUS1LQ6P1R4 473 aaKnown RBP6.46□□□□□ -1.37
CLK3-212ENST00000563418 SLC25A41Q8N5S1 370 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 AGPAT1Q99943 283 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 ARMT1Q9H993 441 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 FARSBQ9NSD9 589 aaKnown RBP6.46□□□□□ -1.37
CLK3-212ENST00000563418 FAM8A1Q9UBU6 413 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 ISPDA4D126 451 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 PDE2AO00408 941 aaPredicted RBP6.46□□□□□ -1.37
CLK3-212ENST00000563418 KPNA3O00505 521 aaPredicted RBP6.46□□□□□ -1.37
CLK3-212ENST00000563418 PDXKO00764 312 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 UGT1A9O60656 530 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 UGT1A6P19224 532 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 MSH3P20585 1137 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 UGT1A1P22309 533 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 UGT1A4P22310 534 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 PIK3R1P27986 724 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 UGT1A3P35503 534 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 UGT1A5P35504 534 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 CCDC142Q17RM4 750 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 KYAT3Q6YP21 454 aaKnown RBP6.46□□□□□ -1.37
CLK3-212ENST00000563418 CDKL3Q8IVW4 592 aaPredicted RBP6.46□□□□□ -1.37
CLK3-212ENST00000563418 SPIRE2Q8WWL2 714 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 AP3S1Q92572 193 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 TNIP3Q96KP6 325 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 AGAP3Q96P47 875 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 TINF2Q9BSI4 451 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 ZNF717Q9BY31 904 aaPredicted RBP6.46□□□□□ -1.37
CLK3-212ENST00000563418 CAB39LQ9H9S4 337 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 UGT1A7Q9HAW7 530 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 UGT1A10Q9HAW8 530 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 UGT1A8Q9HAW9 530 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 PHF8Q9UPP1 1060 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 ZNF510Q9Y2H8 683 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 TRIM49D1C9J1S8 452 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 K7ENM7 598 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 SPTLC1O15269 473 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 IL6P05231 212 aa6.46□□□□□ -1.37
CLK3-212ENST00000563418 PRDX6P30041 224 aa6.46□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms