RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 CCR1P32246 355 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 ATP5C1P36542 298 aaKnown RBP9.63□□□□□ -0.87
VPS39-205ENST00000562258 CCZ1BP86790 482 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 CCZ1P86791 482 aaPredicted RBP9.63□□□□□ -0.87
VPS39-205ENST00000562258 KCNMA1Q12791 1236 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 DAB2IPQ5VWQ8 1189 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 CPLX4Q7Z7G2 160 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 NAT16Q8N8M0 369 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 ATG4AQ8WYN0 398 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 APOL2Q9BQE5 337 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 NTPCRQ9BSD7 190 aaKnown RBP9.63□□□□□ -0.87
VPS39-205ENST00000562258 CNPY3Q9BT09 278 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 MAF1Q9H063 256 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 DDX56Q9NY93 547 aaKnown RBP9.63□□□□□ -0.87
VPS39-205ENST00000562258 BFARQ9NZS9 450 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.63□□□□□ -0.87
VPS39-205ENST00000562258 DDX3XO00571 662 aaKnown RBP eCLIP9.63□□□□□ -0.87
VPS39-205ENST00000562258 DYNC1I1O14576 645 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 RRP9O43818 475 aaKnown RBP9.63□□□□□ -0.87
VPS39-205ENST00000562258 F9P00740 461 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 NFKBIAP25963 317 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 TAF10Q12962 218 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 IRF2BP1Q8IU81 584 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 EPS8L1Q8TE68 723 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 TMEM40Q8WWA1 233 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 TTC1Q99614 292 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 CATSPERBQ9H7T0 1116 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 UBP1Q9NZI7 540 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 SFMBT1Q9UHJ3 866 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 CDH9Q9ULB4 789 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 AP4E1Q9UPM8 1137 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 ASXL3Q9C0F0 2248 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 ABHD14A-ACY1A0A1B0GW23 586 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 TLR5O60602 858 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 GSTA1P08263 222 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 GSTA2P09210 222 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 IQCF3P0C7M6 154 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 MX2P20592 715 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 PABPC1LQ4VXU2 614 aaKnown RBP9.63□□□□□ -0.87
VPS39-205ENST00000562258 ATAT1Q5SQI0 421 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 LRRC52Q8N7C0 313 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 BBOF1Q8ND07 529 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 KAT2BQ92831 832 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 L1RE1Q9UN81 338 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 NID2Q14112 1375 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 A0A1W2PQJ5 194 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 EOMESO95936 686 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 KRT14P02533 472 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 SLC1A1P43005 524 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 MXRA7P84157 204 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 PDCLQ13371 301 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 SLMAPQ14BN4 828 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 HECTD3Q5T447 861 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 CNKSR3Q6P9H4 555 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 LGI2Q8N0V4 545 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 MFSD14AQ96MC6 490 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 KCNK16Q96T55 309 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 KCNF1Q9H3M0 494 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 RSPH14Q9UHP6 348 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 USP18Q9UMW8 372 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.62□□□□□ -0.87
VPS39-205ENST00000562258 CAPN6Q9Y6Q1 641 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 JCHAINP01591 159 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 RHOCP08134 193 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 CSH1P0DML2 217 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 CSH2P0DML3 217 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 OR1E1P30953 314 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 RFC1P35251 1148 aaPredicted RBP9.62□□□□□ -0.87
VPS39-205ENST00000562258 CNGA2Q16280 664 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 POM121L1PQ3SYA9 428 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 FAM35AQ86V20 835 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 ZNF280BQ86YH2 543 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 GSPT2Q8IYD1 628 aaKnown RBP9.62□□□□□ -0.87
VPS39-205ENST00000562258 CCDC13Q8IYE1 715 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 MCOLN2Q8IZK6 566 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 SNX19Q92543 992 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 ATP6V1E2Q96A05 226 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 UROC1Q96N76 676 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 FMO2Q99518 471 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 GNEQ9Y223 722 aaKnown RBP9.62□□□□□ -0.87
VPS39-205ENST00000562258 ENPP3O14638 875 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 MAPK13O15264 365 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 FBXO21O94952 628 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 TRUB2O95900 331 aaKnown RBP9.62□□□□□ -0.87
VPS39-205ENST00000562258 GZMAP12544 262 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 TUBP50607 506 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 MAPK8IP2Q13387 824 aaPredicted RBP9.62□□□□□ -0.87
VPS39-205ENST00000562258 CLEC16AQ2KHT3 1053 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 ZNF449Q6P9G9 518 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 UNC93AQ86WB7 457 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 DENND1CQ8IV53 801 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 RCOR2Q8IZ40 523 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 FAM71DQ8N9W8 422 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 TRPV1Q8NER1 839 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 UCMAQ8WVF2 138 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.62□□□□□ -0.873e-6■□□□□ 10.9
VPS39-205ENST00000562258 C11orf84Q9BUA3 381 aaPredicted RBP9.62□□□□□ -0.87
VPS39-205ENST00000562258 TKTL2Q9H0I9 626 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 DPEP3Q9H4B8 488 aa9.62□□□□□ -0.87
VPS39-205ENST00000562258 DNAJB4Q9UDY4 337 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms