RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 SMOQ99835 787 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 CCSER2Q9H7U1 834 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 APOBEC3GQ9HC16 384 aaKnown RBP10.84□□□□□ -0.67
LDLR-214ENST00000560628 DMAP1Q9NPF5 467 aaPredicted RBP10.84□□□□□ -0.67
LDLR-214ENST00000560628 DLL3Q9NYJ7 618 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 GMIPQ9P107 970 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.84□□□□□ -0.67
LDLR-214ENST00000560628 OBSL1O75147 1896 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 SDK1Q7Z5N4 2213 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 ANAPC1Q9H1A4 1944 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 MED19A0JLT2 244 aaPredicted RBP10.83□□□□□ -0.68
LDLR-214ENST00000560628 K7EQS6 105 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 RPP40O75818 363 aaKnown RBP10.83□□□□□ -0.68
LDLR-214ENST00000560628 OLFM2O95897 454 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 CYP17A1P05093 508 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 CCDC192P0DO97 292 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 CD58P19256 250 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 RPL13P26373 211 aaKnown RBP10.83□□□□□ -0.68
LDLR-214ENST00000560628 PSMC2P35998 433 aaKnown RBP10.83□□□□□ -0.68
LDLR-214ENST00000560628 ATXN1P54253 815 aaKnown RBP10.83□□□□□ -0.68
LDLR-214ENST00000560628 LMNB2Q03252 620 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 PNOCQ13519 176 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 DMC1Q14565 340 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 CCDC6Q16204 474 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 NFIL3Q16649 462 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 GAB4Q2WGN9 574 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 RHBDF2Q6PJF5 856 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 INTS8Q75QN2 995 aaKnown RBP10.83□□□□□ -0.68
LDLR-214ENST00000560628 KBTBD6Q86V97 674 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 SFTPA1Q8IWL2 248 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 GUF1Q8N442 669 aaKnown RBP10.83□□□□□ -0.68
LDLR-214ENST00000560628 CCDC33Q8N5R6 958 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 PDZD8Q8NEN9 1154 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 TAS1R2Q8TE23 839 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 JAKMIP2Q96AA8 810 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 TWNKQ96RR1 684 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 IL37Q9NZH6 218 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 CDV3Q9UKY7 258 aaKnown RBP10.83□□□□□ -0.68
LDLR-214ENST00000560628 INVSQ9Y283 1065 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 GREB1Q4ZG55 1949 aa10.83□□□□□ -0.68
LDLR-214ENST00000560628 DCDC2BA2VCK2 349 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 PRR5-ARHGAP8B1AHC4 643 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 SLC9A3R1O14745 358 aaPredicted RBP10.82□□□□□ -0.68
LDLR-214ENST00000560628 DCLK1O15075 740 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 MAPK13O15264 365 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 TBX18O95935 607 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 IRF1P10914 325 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 ARHGAP8P85298 464 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 MESP2Q0VG99 397 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 EMC10Q5UCC4 262 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 SYT13Q7L8C5 426 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 CACNA2D4Q7Z3S7 1137 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 UNC93AQ86WB7 457 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 CAMKK1Q8N5S9 505 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 USP33Q8TEY7 942 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 GAB3Q8WWW8 586 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 OVCA2Q8WZ82 227 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 SEMA4DQ92854 862 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 ERCC4Q92889 916 aaPredicted RBP10.82□□□□□ -0.68
LDLR-214ENST00000560628 WBP2Q969T9 261 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 CYFIP2Q96F07 1278 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 IMPG2Q9BZV3 1241 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 NACA2Q9H009 215 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 ARRDC1-AS1Q9H2J1 176 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 CSNK1G1Q9HCP0 422 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 SEMA4GQ9NTN9 838 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 COMMD8Q9NX08 183 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 SH3BP1Q9Y3L3 701 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 PTPRDP23468 1912 aa10.82□□□□□ -0.68
LDLR-214ENST00000560628 CCDC163A0A0D9SF12 145 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.81□□□□□ -0.68
LDLR-214ENST00000560628 E2F8A0AVK6 867 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 GOLGA6L4A6NEF3 574 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 GDF9O60383 454 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 ZDHHC11BP0C7U3 371 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 FAM200BP0CF97 657 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 SDHBP21912 280 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 PRCPP42785 496 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 DGKEP52429 567 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 CSRP2Q16527 193 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 ZCWPW2Q504Y3 356 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 ZNF394Q53GI3 561 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 LY6G5CQ5SRR4 150 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 SNX30Q5VWJ9 437 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 GPRIN1Q7Z2K8 1008 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 C12orf40Q86WS4 652 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 TTC30AQ86WT1 665 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 DDX42Q86XP3 938 aaKnown RBP eCLIP10.81□□□□□ -0.68
LDLR-214ENST00000560628 BBS7Q8IWZ6 715 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 FMR1NBQ8N0W7 255 aaPredicted RBP10.81□□□□□ -0.68
LDLR-214ENST00000560628 NAT16Q8N8M0 369 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 CCDC150Q8NCX0 1101 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 WHAMMQ8TF30 809 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 ACDQ96AP0 544 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 ZFRQ96KR1 1074 aaKnown RBP10.81□□□□□ -0.68
LDLR-214ENST00000560628 HEXIM2Q96MH2 286 aaKnown RBP10.81□□□□□ -0.68
LDLR-214ENST00000560628 PNKPQ96T60 521 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 HNRNPABQ99729 332 aaKnown RBP10.81□□□□□ -0.68
LDLR-214ENST00000560628 NT5C1AQ9BXI3 368 aa10.81□□□□□ -0.68
LDLR-214ENST00000560628 NIF3L1Q9GZT8 377 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms