RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 RASSF2P50749 326 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 MAP3K10Q02779 954 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 SLC25A11Q02978 314 aaKnown RBP11.81□□□□□ -0.52
CUX1-218ENST00000560541 TRPC3Q13507 836 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 LBRQ14739 615 aaKnown RBP11.81□□□□□ -0.52
CUX1-218ENST00000560541 TMEM132BQ14DG7 1078 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 CTC1Q2NKJ3 1217 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 KHDC1Q4VXA5 237 aaKnown RBP11.81□□□□□ -0.52
CUX1-218ENST00000560541 SLC45A4Q5BKX6 768 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 OR52E8Q6IFG1 317 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 ADGRD1Q6QNK2 874 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 ZNF276Q8N554 614 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 DCAKDQ8WVC6 231 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 DHX33Q9H6R0 707 aaKnown RBP11.81□□□□□ -0.52
CUX1-218ENST00000560541 ACSS3Q9H6R3 686 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 METTL5Q9NRN9 209 aaKnown RBP11.81□□□□□ -0.52
CUX1-218ENST00000560541 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.81□□□□□ -0.52
CUX1-218ENST00000560541 SCOCQ9UIL1 159 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 RABL2BQ9UNT1 228 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 ADGRA2Q96PE1 1338 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 FAM155BO75949 473 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 MT-ND3P03897 115 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 KRT19P08727 400 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 BGNP21810 368 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 PTPN4P29074 926 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 SLC18A1P54219 525 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 CDH8P55286 799 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 PSMC1P62191 440 aaKnown RBP11.8□□□□□ -0.52
CUX1-218ENST00000560541 NBPF12Q5TAG4 269 aaPredicted RBP11.8□□□□□ -0.52
CUX1-218ENST00000560541 SLC15A3Q8IY34 581 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 NIM1KQ8IY84 436 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 THNSL1Q8IYQ7 743 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 PDIK1LQ8N165 341 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 TTLL6Q8N841 843 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 BANPQ8N9N5 519 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 MZB1Q8WU39 189 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 SERAC1Q96JX3 654 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 TSSK1BQ9BXA7 367 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 CADM1Q9BY67 442 aaKnown RBP11.8□□□□□ -0.52
CUX1-218ENST00000560541 NIF3L1Q9GZT8 377 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 ARHGEF38Q9NXL2 777 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 DDX56Q9NY93 547 aaKnown RBP11.8□□□□□ -0.52
CUX1-218ENST00000560541 ARMCX1Q9P291 453 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 ZNF214Q9UL59 606 aaPredicted RBP11.8□□□□□ -0.52
CUX1-218ENST00000560541 TMCO1Q9UM00 188 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 PLSCR1O15162 318 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 MARK3P27448 753 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 ARL2P36404 184 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 ELK3P41970 407 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 CPA2P48052 419 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 EIF3EP60228 445 aaKnown RBP11.8□□□□□ -0.52
CUX1-218ENST00000560541 YWHAGP61981 247 aaKnown RBP eCLIP11.8□□□□□ -0.52
CUX1-218ENST00000560541 CNTN2Q02246 1040 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 ENPEPQ07075 957 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 MMRN1Q13201 1228 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 PTK7Q13308 1070 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 ZNF699Q32M78 642 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 SMUG1Q53HV7 270 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 UBR7Q8N806 425 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 KCTD6Q8NC69 237 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 SMC1BQ8NDV3 1235 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 HIC2Q96JB3 615 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 WDR37Q9Y2I8 494 aa11.8□□□□□ -0.52
CUX1-218ENST00000560541 KBTBD13C9JR72 458 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 MAGEB3O15480 346 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 HAUS5O94927 633 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 RBP3P10745 1247 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 KDELR1P24390 212 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 FAAP100Q0VG06 881 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 RAB6CQ53S08 254 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 FAXCQ5TGI0 409 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 EEPD1Q7L9B9 569 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 BRSK2Q8IWQ3 736 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 SCYL3Q8IZE3 742 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 TMCO5AQ8N6Q1 288 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 DTX3LQ8TDB6 740 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 TMEM120AQ9BXJ8 343 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 OXCT2Q9BYC2 517 aaPredicted RBP11.79□□□□□ -0.52
CUX1-218ENST00000560541 TRIM55Q9BYV6 548 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 RAB6CQ9H0N0 254 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 VCX3BQ9H321 246 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 VCX3AQ9NNX9 186 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 IKBKGQ9Y6K9 419 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 SPATA31C2B4DYI2 1134 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 BOLA2-SMG1P6H3BVE0 249 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 PDLIM1O00151 329 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 LSM8O95777 96 aaKnown RBP11.79□□□□□ -0.52
CUX1-218ENST00000560541 NFKBIAP25963 317 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 MLH1P40692 756 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 ARFIP2P53365 341 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 CACNA2D1P54289 1103 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 RCN2Q14257 317 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 MUM1Q2TAK8 710 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 KLHL38Q2WGJ6 581 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 MDH1BQ5I0G3 518 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 SH3PXD2AQ5TCZ1 1133 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 XRRA1Q6P2D8 792 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 SAMD7Q7Z3H4 446 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 CTAGE3PQ8IX95 158 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 LRRC71Q8N4P6 559 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms