RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 AHRRA9YTQ3 701 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 ZNF185O15231 689 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 SBK3P0C264 359 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 CT47B1P0C2W7 299 aaPredicted RBP7.08□□□□□ -1.28
RTF1-204ENST00000558117 LAG3P18627 525 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 SLC6A2P23975 617 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 KLF10Q13118 480 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 LY6G5CQ5SRR4 150 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 PPP4R3AQ6IN85 833 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 KCNV1Q6PIU1 500 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 MED25Q71SY5 747 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 TPH2Q8IWU9 490 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.08□□□□□ -1.28
RTF1-204ENST00000558117 TRIB2Q92519 343 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 LENG9Q96B70 501 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 VRK1Q99986 396 aaPredicted RBP7.08□□□□□ -1.28
RTF1-204ENST00000558117 GPRC5BQ9NZH0 403 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 GJD2Q9UKL4 321 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 ATP11BQ9Y2G3 1177 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 USP15Q9Y4E8 981 aaPredicted RBP7.08□□□□□ -1.28
RTF1-204ENST00000558117 VPS13AQ96RL7 3174 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 GCN1Q92616 2671 aaKnown RBP7.08□□□□□ -1.28
RTF1-204ENST00000558117 DOCK3Q8IZD9 2030 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 GAGE12BA1L429 117 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 GAGE12HA6NDE8 117 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 PRSS23O95084 383 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 ABHD16AO95870 558 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 ITGB1P05556 798 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 HLA-DOAP06340 250 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 ALAS1P13196 640 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 AKAP5P24588 427 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 RPS8P62241 208 aaKnown RBP7.07□□□□□ -1.28
RTF1-204ENST00000558117 FAM189BP81408 668 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 TLE1Q04724 770 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 SF3B3Q15393 1217 aaKnown RBP7.07□□□□□ -1.28
RTF1-204ENST00000558117 KHDC1Q4VXA5 237 aaKnown RBP7.07□□□□□ -1.28
RTF1-204ENST00000558117 FAM102AQ5T9C2 384 aaPredicted RBP7.07□□□□□ -1.28
RTF1-204ENST00000558117 LRRC55Q6ZSA7 311 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 TTC7BQ86TV6 843 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 PROKR1Q8TCW9 393 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 ZKSCAN4Q969J2 545 aaPredicted RBP7.07□□□□□ -1.28
RTF1-204ENST00000558117 PRMT6Q96LA8 375 aaPredicted RBP7.07□□□□□ -1.28
RTF1-204ENST00000558117 SORCS2Q96PQ0 1159 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 NUP88Q99567 741 aaPredicted RBP7.07□□□□□ -1.28
RTF1-204ENST00000558117 PRRX2Q99811 253 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 C11orf54Q9H0W9 315 aaPredicted RBP7.07□□□□□ -1.28
RTF1-204ENST00000558117 PCED1AQ9H1Q7 454 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 GSTO2Q9H4Y5 243 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 VEZTQ9HBM0 779 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 CHST2Q9Y4C5 530 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 MTCH2Q9Y6C9 303 aa7.07□□□□□ -1.28
RTF1-204ENST00000558117 COL4A6Q14031 1691 aa7.06□□□□□ -1.28
RTF1-204ENST00000558117 PRR23AA6NEV1 266 aa7.06□□□□□ -1.28
RTF1-204ENST00000558117 KIAA0391O15091 583 aaKnown RBP7.06□□□□□ -1.28
RTF1-204ENST00000558117 NCR1O76036 304 aa7.06□□□□□ -1.28
RTF1-204ENST00000558117 RPLP2P05387 115 aaKnown RBP7.06□□□□□ -1.28
RTF1-204ENST00000558117 VCAM1P19320 739 aa7.06□□□□□ -1.28
RTF1-204ENST00000558117 NR4A1P22736 598 aa7.06□□□□□ -1.28
RTF1-204ENST00000558117 PPATQ06203 517 aa7.06□□□□□ -1.28
RTF1-204ENST00000558117 NFE2Q16621 373 aaPredicted RBP7.06□□□□□ -1.28
RTF1-204ENST00000558117 CCDC129Q6ZRS4 1044 aa7.06□□□□□ -1.28
RTF1-204ENST00000558117 DGLUCYQ7Z3D6 616 aa7.06□□□□□ -1.28
RTF1-204ENST00000558117 KRTAP4-2Q9BYR5 136 aa7.06□□□□□ -1.28
RTF1-204ENST00000558117 AKIP1Q9NQ31 210 aa7.06□□□□□ -1.28
RTF1-204ENST00000558117 FAM30AQ9NZY2 134 aa7.06□□□□□ -1.28
RTF1-204ENST00000558117 PNMA8BQ9ULN7 279 aaPredicted RBP7.06□□□□□ -1.28
RTF1-204ENST00000558117 EP300Q09472 2414 aaPredicted RBP7.06□□□□□ -1.28
RTF1-204ENST00000558117 SH3TC1Q8TE82 1336 aa7.05□□□□□ -1.28
RTF1-204ENST00000558117 CEP250Q9BV73 2442 aa7.05□□□□□ -1.28
RTF1-204ENST00000558117 GRM6O15303 877 aa7.05□□□□□ -1.28
RTF1-204ENST00000558117 PRPF3O43395 683 aaKnown RBP7.05□□□□□ -1.28
RTF1-204ENST00000558117 RFPL1O75677 317 aa7.05□□□□□ -1.28
RTF1-204ENST00000558117 HMOX1P09601 288 aa7.05□□□□□ -1.28
RTF1-204ENST00000558117 CCND3P30281 292 aaPredicted RBP7.05□□□□□ -1.28
RTF1-204ENST00000558117 SLC6A4P31645 630 aa7.05□□□□□ -1.28
RTF1-204ENST00000558117 HMGA2P52926 109 aa7.05□□□□□ -1.28
RTF1-204ENST00000558117 ZNF267Q14586 743 aaPredicted RBP7.05□□□□□ -1.28
RTF1-204ENST00000558117 RAB39AQ14964 217 aa7.05□□□□□ -1.28
RTF1-204ENST00000558117 PTPAQ15257 358 aa7.05□□□□□ -1.28
RTF1-204ENST00000558117 PDCD4Q53EL6 469 aaKnown RBP7.05□□□□□ -1.28
RTF1-204ENST00000558117 GADL1Q6ZQY3 521 aa7.05□□□□□ -1.28
RTF1-204ENST00000558117 MRGPREQ86SM8 312 aa7.05□□□□□ -1.28
RTF1-204ENST00000558117 HPS3Q969F9 1004 aa7.05□□□□□ -1.28
RTF1-204ENST00000558117 RMDN1Q96DB5 314 aa7.05□□□□□ -1.28
RTF1-204ENST00000558117 CALCOCO1Q9P1Z2 691 aa7.05□□□□□ -1.28
RTF1-204ENST00000558117 ING1Q9UK53 422 aaPredicted RBP7.05□□□□□ -1.28
RTF1-204ENST00000558117 NOB1Q9ULX3 412 aaKnown RBP7.05□□□□□ -1.28
RTF1-204ENST00000558117 TECTAO75443 2155 aa7.05□□□□□ -1.28
RTF1-204ENST00000558117 PLXNA3P51805 1871 aa7.04□□□□□ -1.28
RTF1-204ENST00000558117 GAKO14976 1311 aa7.04□□□□□ -1.28
RTF1-204ENST00000558117 NDUFA10O95299 355 aa7.04□□□□□ -1.28
RTF1-204ENST00000558117 SLPIP03973 132 aa7.04□□□□□ -1.28
RTF1-204ENST00000558117 MALP21145 153 aa7.04□□□□□ -1.28
RTF1-204ENST00000558117 ZFP36P26651 326 aaKnown RBP7.04□□□□□ -1.28
RTF1-204ENST00000558117 PGS1Q32NB8 556 aa7.04□□□□□ -1.28
RTF1-204ENST00000558117 TRIM60Q495X7 471 aa7.04□□□□□ -1.28
RTF1-204ENST00000558117 ATAT1Q5SQI0 421 aa7.04□□□□□ -1.28
RTF1-204ENST00000558117 IFIT1BQ5T764 474 aaKnown RBP7.04□□□□□ -1.28
RTF1-204ENST00000558117 TTLL5Q6EMB2 1281 aa7.04□□□□□ -1.28
RTF1-204ENST00000558117 SLC39A5Q6ZMH5 540 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms