RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ZNF280AP59817 542 aaPredicted RBP12.86□□□□□ -0.35
LDLR-205ENST00000557933 PSMC1P62191 440 aaKnown RBP12.86□□□□□ -0.35
LDLR-205ENST00000557933 USP37Q86T82 979 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 MPP5Q8N3R9 675 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.86□□□□□ -0.35
LDLR-205ENST00000557933 NAT8LQ8N9F0 302 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 DEPTORQ8TB45 409 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 FAF2Q96CS3 445 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 ZNF184Q99676 751 aaPredicted RBP12.86□□□□□ -0.35
LDLR-205ENST00000557933 MOV10L1Q9BXT6 1211 aaKnown RBP12.86□□□□□ -0.35
LDLR-205ENST00000557933 CYP26B1Q9NR63 512 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 SMYD2Q9NRG4 433 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 SPDYE2BA6NHP3 402 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 A6NJR5 290 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 EXTL3O43909 919 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 RGS20O76081 388 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 PGM3O95394 542 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 PYGLP06737 847 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 FESP07332 822 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 SPDYE6P0CI01 402 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 KRT3P12035 628 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 PHBP35232 272 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 CCNFP41002 786 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 Q3C1V9 767 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 CWF19L1Q69YN2 538 aaKnown RBP12.86□□□□□ -0.35
LDLR-205ENST00000557933 C15orf39Q6ZRI6 1047 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 LRRC71Q8N4P6 559 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 CCDC110Q8TBZ0 833 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 SLC26A7Q8TE54 656 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 VTI1AQ96AJ9 217 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 TRIM11Q96F44 468 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 CPXM1Q96SM3 734 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 VCXQ9H320 206 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 PXMP2Q9NR77 195 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 SHOC2Q9UQ13 582 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 NR3C2P08235 984 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 RARBP10826 455 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 GTF2A2P52657 109 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 ZNF200P98182 395 aaPredicted RBP12.85□□□□□ -0.35
LDLR-205ENST00000557933 LMNB2Q03252 620 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 PRKG1Q13976 671 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 EMC2Q15006 297 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 PRKD1Q15139 912 aaPredicted RBP12.85□□□□□ -0.35
LDLR-205ENST00000557933 TMEM132AQ24JP5 1023 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 C11orf91Q3C1V1 193 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 PAOXQ6QHF9 649 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 SLC35B2Q8TB61 432 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 DNAJC1Q96KC8 554 aaKnown RBP12.85□□□□□ -0.35
LDLR-205ENST00000557933 MAN1C1Q9NR34 630 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 TBC1D22BQ9NU19 505 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.85□□□□□ -0.35
LDLR-205ENST00000557933 IRAK4Q9NWZ3 460 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 SLC24A2Q9UI40 661 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 SNCAIPQ9Y6H5 919 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 RTP1P59025 263 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 RPL10AP62906 217 aaKnown RBP12.85□□□□□ -0.35
LDLR-205ENST00000557933 SP2Q02086 613 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 CES3Q6UWW8 571 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 TRIM50Q86XT4 487 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 PHF13Q86YI8 300 aaPredicted RBP12.85□□□□□ -0.35
LDLR-205ENST00000557933 TDRPQ86YL5 185 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 ULK2Q8IYT8 1036 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 RNF148Q8N7C7 305 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 PPP1R14CQ8TAE6 165 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 PHF12Q96QT6 1004 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 IMPG2Q9BZV3 1241 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 WDR35Q9P2L0 1181 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 RBBP6Q7Z6E9 1792 aaKnown RBP12.85□□□□□ -0.35
LDLR-205ENST00000557933 DOCK5Q9H7D0 1870 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 A0A0B4J269 797 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 KCNN4O15554 427 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 ITM2AO43736 263 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 LYNP07948 512 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 ANPEPP15144 967 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 GSTT1P30711 240 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 ETV4P43268 484 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 RGS7P49802 495 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 CDH6P55285 790 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 BPIFB4P59827 614 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 ACTR2P61160 394 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 PDE1BQ01064 536 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 USP4Q13107 963 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 DPYSL3Q14195 570 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.85□□□□□ -0.352e-6■■□□□ 12
LDLR-205ENST00000557933 TMEM192Q8IY95 271 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 NDUFAF2Q8N183 169 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 MTBPQ96DY7 904 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 SENP1Q9P0U3 644 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 FEM1BQ9UK73 627 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 PCDHGB4Q9UN71 923 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 PCDHGB5Q9Y5G0 923 aa12.85□□□□□ -0.35
LDLR-205ENST00000557933 C3orf70A6NLC5 250 aaPredicted RBP12.84□□□□□ -0.35
LDLR-205ENST00000557933 AHCYL1O43865 530 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 CSH1P0DML2 217 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 CSH2P0DML3 217 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 ADORA2AP29274 412 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 MIPP30301 263 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 MRPS5P82675 430 aaKnown RBP12.84□□□□□ -0.35
LDLR-205ENST00000557933 CIAPIN1Q6FI81 312 aa12.84□□□□□ -0.35
LDLR-205ENST00000557933 IRGCQ6NXR0 463 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms