RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 CCNFP41002 786 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 BASP1P80723 227 aaKnown RBP16.98■□□□□ 0.31
SHMT2-232ENST00000557487 ROR1Q01973 937 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 GAD2Q05329 585 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 TFDP2Q14188 446 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 KCNJ11Q14654 390 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 DUOXA2Q1HG44 320 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 EP400NLQ6ZTU2 488 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 RFX6Q8HWS3 928 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 UNC45BQ8IWX7 931 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 KCTD6Q8NC69 237 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 AGBL3Q8NEM8 1001 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 SLC7A3Q8WY07 619 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 GATA6Q92908 595 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 ACSF2Q96CM8 615 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-232ENST00000557487 LRRC39Q96DD0 335 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 ZWILCHQ9H900 591 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 FBXO40Q9UH90 709 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 TAGLN3Q9UI15 199 aa16.98■□□□□ 0.31
SHMT2-232ENST00000557487 MAFBQ9Y5Q3 323 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-232ENST00000557487 SPATA31C2B4DYI2 1134 aa16.97■□□□□ 0.31
SHMT2-232ENST00000557487 SPECC1L-ADORA2AF8WAN1 911 aa16.97■□□□□ 0.31
SHMT2-232ENST00000557487 ATG7O95352 703 aa16.97■□□□□ 0.31
SHMT2-232ENST00000557487 OATP04181 439 aa16.97■□□□□ 0.31
SHMT2-232ENST00000557487 RFC1P35251 1148 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-232ENST00000557487 AP2B1P63010 937 aa16.97■□□□□ 0.31
SHMT2-232ENST00000557487 KBTBD12Q3ZCT8 623 aa16.97■□□□□ 0.31
SHMT2-232ENST00000557487 C4orf22Q6V702 233 aa16.97■□□□□ 0.31
SHMT2-232ENST00000557487 ZBTB45Q96K62 511 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-232ENST00000557487 SRPK1Q96SB4 655 aaKnown RBP16.97■□□□□ 0.31
SHMT2-232ENST00000557487 KLF6Q99612 283 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-232ENST00000557487 NIFKQ9BYG3 293 aaKnown RBP16.97■□□□□ 0.31
SHMT2-232ENST00000557487 ADAM33Q9BZ11 813 aa16.97■□□□□ 0.31
SHMT2-232ENST00000557487 PAK5Q9P286 719 aa16.97■□□□□ 0.31
SHMT2-232ENST00000557487 CPSF2Q9P2I0 782 aaKnown RBP16.97■□□□□ 0.31
SHMT2-232ENST00000557487 PLLPQ9Y342 182 aa16.97■□□□□ 0.31
SHMT2-232ENST00000557487 MYH9P35579 1960 aaKnown RBP16.97■□□□□ 0.31
SHMT2-232ENST00000557487 TCRBV7S3A2A0A539 114 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 KBTBD13C9JR72 458 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 VWA5AO00534 786 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 BIRC5O15392 142 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 TM7SF2O76062 418 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 RNF8O76064 485 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 GNAT1P11488 350 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 EFNA5P52803 228 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 YWHAGP61981 247 aaKnown RBP eCLIP16.96■□□□□ 0.31
SHMT2-232ENST00000557487 TRPC3Q13507 836 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 THOC5Q13769 683 aaKnown RBP16.96■□□□□ 0.31
SHMT2-232ENST00000557487 NOMO1Q15155 1222 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 ZBTB41Q5SVQ8 909 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 KYAT3Q6YP21 454 aaKnown RBP16.96■□□□□ 0.31
SHMT2-232ENST00000557487 ADGRG6Q86SQ4 1221 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 ZC3H18Q86VM9 953 aaKnown RBP16.96■□□□□ 0.31
SHMT2-232ENST00000557487 SCUBE1Q8IWY4 988 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 CDAN1Q8IWY9 1227 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 FAM71DQ8N9W8 422 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 WDR60Q8WVS4 1066 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 SIRPGQ9P1W8 387 aa16.96■□□□□ 0.31
SHMT2-232ENST00000557487 B2RBV5 119 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 ADCY3O60266 1144 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 FKBP6O75344 327 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 CSDE1O75534 798 aaKnown RBP16.96■□□□□ 0.3
SHMT2-232ENST00000557487 PRKCHP24723 683 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 IL1R2P27930 398 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 TUBP50607 506 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 C1QTNF8P60827 252 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 PTPN20Q4JDL3 420 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 AAGABQ6PD74 315 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 ARFGAP1Q8N6T3 406 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 SLC4A11Q8NBS3 891 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 SPATA18Q8TC71 538 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 TMEM143Q96AN5 459 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 E2F7Q96AV8 911 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 NMUR2Q9GZQ4 415 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 STN1Q9H668 368 aaKnown RBP16.96■□□□□ 0.3
SHMT2-232ENST00000557487 ZNF302Q9NR11 478 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 ARHGEF4Q9NR80 690 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 ASNSD1Q9NWL6 643 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 IL1RAPL1Q9NZN1 696 aa16.96■□□□□ 0.3
SHMT2-232ENST00000557487 SAE1Q9UBE0 346 aaPredicted RBP16.96■□□□□ 0.3
SHMT2-232ENST00000557487 ZBTB12Q9Y330 459 aaPredicted RBP16.96■□□□□ 0.3
SHMT2-232ENST00000557487 SSC5DA1L4H1 1573 aa16.95■□□□□ 0.3
SHMT2-232ENST00000557487 ANKRD33BA6NCL7 494 aa16.95■□□□□ 0.3
SHMT2-232ENST00000557487 TOM1L1O75674 476 aa16.95■□□□□ 0.3
SHMT2-232ENST00000557487 KRT38O76015 456 aa16.95■□□□□ 0.3
SHMT2-232ENST00000557487 RGS20O76081 388 aa16.95■□□□□ 0.3
SHMT2-232ENST00000557487 ENDOD1O94919 500 aa16.95■□□□□ 0.3
SHMT2-232ENST00000557487 CST3P01034 146 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-232ENST00000557487 MYCNP04198 464 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-232ENST00000557487 MAGEA6P43360 314 aa16.95■□□□□ 0.3
SHMT2-232ENST00000557487 CACNA2D1P54289 1103 aa16.95■□□□□ 0.3
SHMT2-232ENST00000557487 MYL6P60660 151 aa16.95■□□□□ 0.3
SHMT2-232ENST00000557487 ACTR3P61158 418 aa16.95■□□□□ 0.3
SHMT2-232ENST00000557487 PSMC1P62191 440 aaKnown RBP16.95■□□□□ 0.3
SHMT2-232ENST00000557487 FSTL1Q12841 308 aa16.95■□□□□ 0.3
SHMT2-232ENST00000557487 CYP4A22Q5TCH4 519 aa16.95■□□□□ 0.3
SHMT2-232ENST00000557487 USP50Q70EL3 339 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-232ENST00000557487 ARCQ7LC44 396 aa16.95■□□□□ 0.3
SHMT2-232ENST00000557487 MYLK4Q86YV6 388 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-232ENST00000557487 CRLF3Q8IUI8 442 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms