RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 ZDHHC11BP0C7U3 371 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 SETSIPP0DME0 302 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 KRT5P13647 590 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 AVPR2P30518 371 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 PSEN1P49768 467 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 KIF11P52732 1056 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 ZNF132P52740 706 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 NUBP1P53384 320 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 SLC7A9P82251 487 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 SKOR2Q2VWA4 1001 aaPredicted RBP13.17□□□□□ -0.3
SLIRP-209ENST00000557342 C1orf228Q6PIY5 440 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 LCLAT1Q6UWP7 414 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 CCDC186Q7Z3E2 898 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 PIGZQ86VD9 579 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 DDX42Q86XP3 938 aaKnown RBP eCLIP13.17□□□□□ -0.3
SLIRP-209ENST00000557342 KIAA1958Q8N8K9 716 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 LRRC3BQ96PB8 259 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 SLC22A12Q96S37 553 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 NELL2Q99435 816 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 PRRX2Q99811 253 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 C8orf33Q9H7E9 229 aaPredicted RBP13.17□□□□□ -0.3
SLIRP-209ENST00000557342 HEBP1Q9NRV9 189 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 FANCLQ9NW38 375 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 GMIPQ9P107 970 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 CCL26Q9Y258 94 aa13.17□□□□□ -0.3
SLIRP-209ENST00000557342 MRPS17Q9Y2R5 130 aaKnown RBP13.17□□□□□ -0.3
SLIRP-209ENST00000557342 KANSL1LA0AUZ9 987 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 SMTNL1A8MU46 457 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 ARNTLO00327 626 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 MED7O43513 233 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 MBL2P11226 248 aaPredicted RBP13.16□□□□□ -0.3
SLIRP-209ENST00000557342 AOC1P19801 751 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 COL9A1P20849 921 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 CDK11BP21127 795 aaKnown RBP13.16□□□□□ -0.3
SLIRP-209ENST00000557342 PDE4CQ08493 712 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 USP4Q13107 963 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 MTF1Q14872 753 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 PDGFRLQ15198 375 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 KRT31Q15323 416 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 ZNF77Q15935 545 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 ARHGAP44Q17R89 818 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 ANO6Q4KMQ2 910 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 RAB41Q5JT25 222 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 CWF19L1Q69YN2 538 aaKnown RBP13.16□□□□□ -0.3
SLIRP-209ENST00000557342 ZNF852Q6ZMS4 543 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 TPRG1Q6ZUI0 275 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 GPRIN1Q7Z2K8 1008 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 TADA2BQ86TJ2 420 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 TTC30AQ86WT1 665 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 ARHGAP18Q8N392 663 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 SH3RF2Q8TEC5 729 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 BPIFA3Q9BQP9 254 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 DDX23Q9BUQ8 820 aaKnown RBP13.16□□□□□ -0.3
SLIRP-209ENST00000557342 OSBPL6Q9BZF3 934 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 NACA2Q9H009 215 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 RNF38Q9H0F5 515 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 VPS16Q9H269 839 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 LRRC4Q9HBW1 653 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 GKN1Q9NS71 199 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 TAB2Q9NYJ8 693 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.16□□□□□ -0.3
SLIRP-209ENST00000557342 SIT1Q9Y3P8 196 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 USP3Q9Y6I4 520 aa13.16□□□□□ -0.3
SLIRP-209ENST00000557342 NCAM2O15394 837 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 RALAP11233 206 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 BRD2P25440 801 aaKnown RBP13.15□□□□□ -0.3
SLIRP-209ENST00000557342 PLA2G4AP47712 749 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 IFNAR2P48551 515 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 KPNA1P52294 538 aaPredicted RBP13.15□□□□□ -0.3
SLIRP-209ENST00000557342 VCPP55072 806 aaKnown RBP13.15□□□□□ -0.3
SLIRP-209ENST00000557342 MEA1Q16626 185 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 PKDCCQ504Y2 493 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 FKBP15Q5T1M5 1219 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 IER5LQ5T953 404 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 GJB7Q6PEY0 223 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 ZNF276Q8N554 614 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 UBA3Q8TBC4 463 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 OSCP1Q8WVF1 389 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 KCTD13Q8WZ19 329 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 TFAP2BQ92481 460 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 SHC3Q92529 594 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 ZFYVE19Q96K21 471 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 CDK5RAP1Q96SZ6 601 aaKnown RBP13.15□□□□□ -0.3
SLIRP-209ENST00000557342 FAM83CQ9BQN1 747 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 SIX2Q9NPC8 291 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 CYLDQ9NQC7 956 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 LIMA1Q9UHB6 759 aaKnown RBP13.15□□□□□ -0.3
SLIRP-209ENST00000557342 DNAJC12Q9UKB3 198 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 CPQQ9Y646 472 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 PIAS3Q9Y6X2 628 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 ZNF318Q5VUA4 2279 aa13.15□□□□□ -0.3
SLIRP-209ENST00000557342 M0QYV0 167 aa13.14□□□□□ -0.31
SLIRP-209ENST00000557342 LEFTY2O00292 366 aa13.14□□□□□ -0.31
SLIRP-209ENST00000557342 SLC9A3R1O14745 358 aaPredicted RBP13.14□□□□□ -0.31
SLIRP-209ENST00000557342 CYP26A1O43174 497 aa13.14□□□□□ -0.31
SLIRP-209ENST00000557342 COCHO43405 550 aa13.14□□□□□ -0.31
SLIRP-209ENST00000557342 TLR5O60602 858 aa13.14□□□□□ -0.31
SLIRP-209ENST00000557342 GNA15P30679 374 aa13.14□□□□□ -0.31
SLIRP-209ENST00000557342 ATP5C1P36542 298 aaKnown RBP13.14□□□□□ -0.31
SLIRP-209ENST00000557342 USP8P40818 1118 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms