RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 RHOBTB2Q9BYZ6 727 aa4.97□□□□□ -1.61
SCFD1-217ENST00000555953 ZSCAN32Q9NX65 697 aa4.97□□□□□ -1.61
SCFD1-217ENST00000555953 RNF8O76064 485 aa4.96□□□□□ -1.62
SCFD1-217ENST00000555953 CT47B1P0C2W7 299 aaPredicted RBP4.96□□□□□ -1.62
SCFD1-217ENST00000555953 CBSLP0DN79 551 aa4.96□□□□□ -1.62
SCFD1-217ENST00000555953 CYP19A1P11511 503 aaPredicted RBP4.96□□□□□ -1.62
SCFD1-217ENST00000555953 PHKG2P15735 406 aa4.96□□□□□ -1.62
SCFD1-217ENST00000555953 CCKARP32238 428 aa4.96□□□□□ -1.62
SCFD1-217ENST00000555953 THBS4P35443 961 aa4.96□□□□□ -1.62
SCFD1-217ENST00000555953 CBSP35520 551 aa4.96□□□□□ -1.62
SCFD1-217ENST00000555953 ZNF91Q05481 1191 aa4.96□□□□□ -1.62
SCFD1-217ENST00000555953 LARS2Q15031 903 aaKnown RBP4.96□□□□□ -1.62
SCFD1-217ENST00000555953 TWIST1Q15672 202 aa4.96□□□□□ -1.62
SCFD1-217ENST00000555953 TMEM65Q6PI78 240 aa4.96□□□□□ -1.62
SCFD1-217ENST00000555953 B3GNT9Q6UX72 402 aa4.96□□□□□ -1.62
SCFD1-217ENST00000555953 ZDHHC24Q6UX98 284 aa4.96□□□□□ -1.62
SCFD1-217ENST00000555953 ZCRB1Q8TBF4 217 aaKnown RBP4.96□□□□□ -1.62
SCFD1-217ENST00000555953 ACO2Q99798 780 aaKnown RBP4.96□□□□□ -1.62
SCFD1-217ENST00000555953 FOXP1Q9H334 677 aaPredicted RBP4.96□□□□□ -1.62
SCFD1-217ENST00000555953 ATP6V0A4Q9HBG4 840 aa4.96□□□□□ -1.62
SCFD1-217ENST00000555953 TMEM184CQ9NVA4 438 aa4.96□□□□□ -1.62
SCFD1-217ENST00000555953 LRP12Q9Y561 859 aa4.96□□□□□ -1.62
SCFD1-217ENST00000555953 CDY1Q9Y6F8 540 aa4.96□□□□□ -1.62
SCFD1-217ENST00000555953 CCDC187A0A096LP49 1063 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 FAM90A10PA6NDY2 464 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 M0R3H8 397 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 SPRY2O43597 315 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 TBC1D4O60343 1298 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 SRGAP2O75044 1071 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 UQCRC1P31930 480 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 SRSF1Q07955 248 aaKnown RBP eCLIP4.95□□□□□ -1.62
SCFD1-217ENST00000555953 RAB32Q13637 225 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 LEXMQ3ZCV2 418 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 C4orf46Q504U0 113 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 TMTC4Q5T4D3 741 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 KCTD20Q7Z5Y7 419 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 RAB11FIP4Q86YS3 637 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 LIX1LQ8IVB5 337 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 OR56A3Q8NH54 315 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 MAFAQ8NHW3 353 aaPredicted RBP4.95□□□□□ -1.62
SCFD1-217ENST00000555953 ADAMTS15Q8TE58 950 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 WDYHV1Q96HA8 205 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 LRGUKQ96M69 825 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 NMRK2Q9NPI5 230 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 PNMA8BQ9ULN7 279 aaPredicted RBP4.95□□□□□ -1.62
SCFD1-217ENST00000555953 USP22Q9UPT9 525 aa4.95□□□□□ -1.62
SCFD1-217ENST00000555953 IGKV2D-30A0A075B6S6 120 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 CREB1P16220 341 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 HSPA6P17066 643 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 ATF7P17544 494 aaPredicted RBP4.94□□□□□ -1.62
SCFD1-217ENST00000555953 EN2P19622 333 aaPredicted RBP4.94□□□□□ -1.62
SCFD1-217ENST00000555953 SCP2P22307 547 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 EPHA3P29320 983 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 PRKAR1BP31321 381 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 AGFG1P52594 562 aaKnown RBP4.94□□□□□ -1.62
SCFD1-217ENST00000555953 TIRAPP58753 221 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 KRTAP10-7P60409 375 aaPredicted RBP4.94□□□□□ -1.62
SCFD1-217ENST00000555953 CFHR1Q03591 330 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 DCDC5Q6ZRR9 648 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 IL31RAQ8NI17 732 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 IGFBPL1Q8WX77 278 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 AIFM3Q96NN9 605 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 TAAR9Q96RI9 348 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 VN1R3Q9BXE9 311 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 TRIM5Q9C035 493 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 XPNPEP3Q9NQH7 507 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 SNX15Q9NRS6 342 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 DNMT3BQ9UBC3 853 aaKnown RBP4.94□□□□□ -1.62
SCFD1-217ENST00000555953 PI4KBQ9UBF8 816 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 CNTNAP2Q9UHC6 1331 aa4.94□□□□□ -1.62
SCFD1-217ENST00000555953 ZMYM2Q9UBW7 1377 aa4.93□□□□□ -1.62
SCFD1-217ENST00000555953 TBX3O15119 743 aa4.93□□□□□ -1.62
SCFD1-217ENST00000555953 CD3EAPO15446 510 aaKnown RBP4.93□□□□□ -1.62
SCFD1-217ENST00000555953 PHGDHO43175 533 aaKnown RBP4.93□□□□□ -1.62
SCFD1-217ENST00000555953 TLR2O60603 784 aa4.93□□□□□ -1.62
SCFD1-217ENST00000555953 RASAL1O95294 804 aa4.93□□□□□ -1.62
SCFD1-217ENST00000555953 MYBP10242 640 aa4.93□□□□□ -1.62
SCFD1-217ENST00000555953 TIAL1Q01085 375 aaKnown RBP eCLIP4.93□□□□□ -1.62
SCFD1-217ENST00000555953 PIN1Q13526 163 aaPredicted RBP4.93□□□□□ -1.62
SCFD1-217ENST00000555953 PTPROQ16827 1216 aa4.93□□□□□ -1.62
SCFD1-217ENST00000555953 CACHD1Q5VU97 1274 aa4.93□□□□□ -1.62
SCFD1-217ENST00000555953 RANBP10Q6VN20 620 aa4.93□□□□□ -1.62
SCFD1-217ENST00000555953 DEF8Q6ZN54 512 aa4.93□□□□□ -1.62
SCFD1-217ENST00000555953 ZBTB34Q8NCN2 500 aa4.93□□□□□ -1.62
SCFD1-217ENST00000555953 SLC35G2Q8TBE7 412 aa4.93□□□□□ -1.62
SCFD1-217ENST00000555953 JPH3Q8WXH2 748 aaPredicted RBP4.93□□□□□ -1.62
SCFD1-217ENST00000555953 GPATCH3Q96I76 525 aa4.93□□□□□ -1.62
SCFD1-217ENST00000555953 ZBTB45Q96K62 511 aaPredicted RBP4.93□□□□□ -1.62
SCFD1-217ENST00000555953 MARK4Q96L34 752 aa4.93□□□□□ -1.62
SCFD1-217ENST00000555953 RTFDC1Q9BY42 306 aaPredicted RBP4.93□□□□□ -1.62
SCFD1-217ENST00000555953 ZNF518BQ9C0D4 1074 aa4.93□□□□□ -1.62
SCFD1-217ENST00000555953 GAR1Q9NY12 217 aaKnown RBP4.93□□□□□ -1.62
SCFD1-217ENST00000555953 HEY2Q9UBP5 337 aa4.93□□□□□ -1.62
SCFD1-217ENST00000555953 CD8B2A6NJW9 211 aa4.92□□□□□ -1.62
SCFD1-217ENST00000555953 CNOT3O75175 753 aaKnown RBP4.92□□□□□ -1.62
SCFD1-217ENST00000555953 ALDH1L1O75891 902 aa4.92□□□□□ -1.62
SCFD1-217ENST00000555953 OAZ2O95190 189 aa4.92□□□□□ -1.62
SCFD1-217ENST00000555953 MTHFSP49914 203 aa4.92□□□□□ -1.62
SCFD1-217ENST00000555953 KRTAP10-6P60371 365 aaPredicted RBP4.92□□□□□ -1.62
SCFD1-217ENST00000555953 ID2Q02363 134 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms