RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 FBXO46Q6PJ61 603 aaPredicted RBP27.56■■■□□ 2
CCDC88C-205ENST00000553403 SLC43A3Q8NBI5 491 aa27.56■■■□□ 2
CCDC88C-205ENST00000553403 SLAIN1Q8ND83 568 aa27.56■■■□□ 2
CCDC88C-205ENST00000553403 FAM172AQ8WUF8 416 aa27.56■■■□□ 2
CCDC88C-205ENST00000553403 ATP6V1G3Q96LB4 118 aa27.56■■■□□ 2
CCDC88C-205ENST00000553403 ATP2C2O75185 946 aa27.55■■■□□ 2
CCDC88C-205ENST00000553403 CD48P09326 243 aa27.55■■■□□ 2
CCDC88C-205ENST00000553403 LCP1P13796 627 aa27.55■■■□□ 2
CCDC88C-205ENST00000553403 PLCB3Q01970 1234 aa27.55■■■□□ 2
CCDC88C-205ENST00000553403 GRIK3Q13003 919 aa27.55■■■□□ 2
CCDC88C-205ENST00000553403 ARHGEF6Q15052 776 aa27.55■■■□□ 2
CCDC88C-205ENST00000553403 CDO1Q16878 200 aa27.55■■■□□ 2
CCDC88C-205ENST00000553403 EFHC1Q5JVL4 640 aa27.55■■■□□ 2
CCDC88C-205ENST00000553403 DENND2CQ68D51 928 aa27.55■■■□□ 2
CCDC88C-205ENST00000553403 VSIG1Q86XK7 387 aa27.55■■■□□ 2
CCDC88C-205ENST00000553403 RFX6Q8HWS3 928 aa27.55■■■□□ 2
CCDC88C-205ENST00000553403 KCTD13Q8WZ19 329 aa27.55■■■□□ 2
CCDC88C-205ENST00000553403 FOXP3Q9BZS1 431 aa27.55■■■□□ 2
CCDC88C-205ENST00000553403 CACNG4Q9UBN1 327 aa27.55■■■□□ 2
CCDC88C-205ENST00000553403 NDC80O14777 642 aa27.54■■■□□ 2
CCDC88C-205ENST00000553403 INHAP05111 366 aa27.54■■■□□ 2
CCDC88C-205ENST00000553403 NPR3P17342 541 aa27.54■■■□□ 2
CCDC88C-205ENST00000553403 IGFBP6P24592 240 aaPredicted RBP27.54■■■□□ 2
CCDC88C-205ENST00000553403 ATP11AP98196 1134 aa27.54■■■□□ 2
CCDC88C-205ENST00000553403 DMTNQ08495 405 aa27.54■■■□□ 2
CCDC88C-205ENST00000553403 LHX8Q68G74 356 aa27.54■■■□□ 2
CCDC88C-205ENST00000553403 PAQR9Q6ZVX9 377 aa27.54■■■□□ 2
CCDC88C-205ENST00000553403 TRMT10CQ7L0Y3 403 aaKnown RBP27.54■■■□□ 2
CCDC88C-205ENST00000553403 PIGZQ86VD9 579 aa27.54■■■□□ 2
CCDC88C-205ENST00000553403 MAP7D3Q8IWC1 876 aa27.54■■■□□ 2
CCDC88C-205ENST00000553403 OR2W6PQ8NHA6 318 aa27.54■■■□□ 2
CCDC88C-205ENST00000553403 CENPIQ92674 756 aaPredicted RBP27.54■■■□□ 2
CCDC88C-205ENST00000553403 C11orf84Q9BUA3 381 aaPredicted RBP27.54■■■□□ 2
CCDC88C-205ENST00000553403 DDX23Q9BUQ8 820 aaKnown RBP27.54■■■□□ 2
CCDC88C-205ENST00000553403 HMX1Q9NP08 348 aaPredicted RBP27.54■■■□□ 2
CCDC88C-205ENST00000553403 NGRNQ9NPE2 291 aaKnown RBP27.54■■■□□ 2
CCDC88C-205ENST00000553403 STAU2Q9NUL3 570 aaKnown RBP eCLIP27.54■■■□□ 2
CCDC88C-205ENST00000553403 APOC4-APOC2K7ER74 178 aa27.53■■■□□ 2
CCDC88C-205ENST00000553403 INPPL1O15357 1258 aa27.53■■■□□ 2
CCDC88C-205ENST00000553403 APOC2P02655 101 aa27.53■■■□□ 2
CCDC88C-205ENST00000553403 CKBP12277 381 aa27.53■■■□□ 2
CCDC88C-205ENST00000553403 ACAT1P24752 427 aaKnown RBP27.53■■■□□ 2
CCDC88C-205ENST00000553403 CDH6P55285 790 aa27.53■■■□□ 2
CCDC88C-205ENST00000553403 PRMT2P55345 433 aa27.53■■■□□ 2
CCDC88C-205ENST00000553403 OTUD4Q01804 1114 aaKnown RBP27.53■■■□□ 2
CCDC88C-205ENST00000553403 TFDP2Q14188 446 aa27.53■■■□□ 2
CCDC88C-205ENST00000553403 AGBL2Q5U5Z8 902 aa27.53■■■□□ 2
CCDC88C-205ENST00000553403 IZUMO3Q5VZ72 239 aa27.53■■■□□ 2
CCDC88C-205ENST00000553403 ECHDC2Q86YB7 292 aa27.53■■■□□ 2
CCDC88C-205ENST00000553403 C3orf58Q8NDZ4 430 aa27.53■■■□□ 2
CCDC88C-205ENST00000553403 ACTL9Q8TC94 416 aa27.53■■■□□ 2
CCDC88C-205ENST00000553403 UROC1Q96N76 676 aa27.53■■■□□ 2
CCDC88C-205ENST00000553403 SYT15Q9BQS2 421 aa27.53■■■□□ 2
CCDC88C-205ENST00000553403 CDH9Q9ULB4 789 aa27.53■■■□□ 2
CCDC88C-205ENST00000553403 CASTOR2A6NHX0 329 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 MDM4O15151 490 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 RAB6CQ53S08 254 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 MDH1BQ5I0G3 518 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 KIAA0319Q5VV43 1072 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 CEP128Q6ZU80 1094 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 ZNF598Q86UK7 904 aaKnown RBP27.52■■■□□ 2
CCDC88C-205ENST00000553403 RNF169Q8NCN4 708 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 CLEC4CQ8WTT0 213 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 HAUS1Q96CS2 278 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 MED10Q9BTT4 135 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 CALN1Q9BXU9 219 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 MAK16Q9BXY0 300 aaKnown RBP27.52■■■□□ 2
CCDC88C-205ENST00000553403 RAB6CQ9H0N0 254 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 SEMA4AQ9H3S1 761 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 PCDH9Q9HC56 1237 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 CRTAC1Q9NQ79 661 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 AAASQ9NRG9 546 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 ZNF487B1APH4 448 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 VPS41P49754 854 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 DYNLT1P63172 113 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 IFFO1Q0D2I5 559 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 DPYSL3Q14195 570 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 EMC10Q5UCC4 262 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 HIBCHQ6NVY1 386 aaPredicted RBP27.52■■■□□ 2
CCDC88C-205ENST00000553403 CROCCP2Q86T23 111 aa27.52■■■□□ 2
CCDC88C-205ENST00000553403 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP27.52■■■□□ 2
CCDC88C-205ENST00000553403 CLDN5O00501 218 aa27.51■■□□□ 1.99
CCDC88C-205ENST00000553403 FAM200BP0CF97 657 aa27.51■■□□□ 1.99
CCDC88C-205ENST00000553403 ODC1P11926 461 aa27.51■■□□□ 1.99
CCDC88C-205ENST00000553403 PCSK1P29120 753 aa27.51■■□□□ 1.99
CCDC88C-205ENST00000553403 LMAN1P49257 510 aa27.51■■□□□ 1.99
CCDC88C-205ENST00000553403 HDAC4P56524 1084 aa27.51■■□□□ 1.99
CCDC88C-205ENST00000553403 TUSC3Q13454 348 aa27.51■■□□□ 1.99
CCDC88C-205ENST00000553403 KRT81Q14533 505 aa27.51■■□□□ 1.99
CCDC88C-205ENST00000553403 SCYL2Q6P3W7 929 aa27.51■■□□□ 1.99
CCDC88C-205ENST00000553403 TRAF7Q6Q0C0 670 aa27.51■■□□□ 1.99
CCDC88C-205ENST00000553403 PTCH2Q9Y6C5 1203 aa27.51■■□□□ 1.99
CCDC88C-205ENST00000553403 A0A1W2PQ45 241 aaPredicted RBP27.5■■□□□ 1.99
CCDC88C-205ENST00000553403 A0A1W2PQY0 241 aa27.5■■□□□ 1.99
CCDC88C-205ENST00000553403 DNALI1O14645 258 aaPredicted RBP27.5■■□□□ 1.99
CCDC88C-205ENST00000553403 RIPK2O43353 540 aa27.5■■□□□ 1.99
CCDC88C-205ENST00000553403 POMCP01189 267 aa27.5■■□□□ 1.99
CCDC88C-205ENST00000553403 SKOR1P84550 965 aa27.5■■□□□ 1.99
CCDC88C-205ENST00000553403 TIGD5Q53EQ6 642 aa27.5■■□□□ 1.99
CCDC88C-205ENST00000553403 CLEC20AQ6ZU45 233 aa27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms