RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 RNASELQ05823 741 aaKnown RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 KLHL30Q0D2K2 578 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 RAPGEF1Q13905 1077 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 SLC29A2Q14542 456 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 KCTD19Q17RG1 926 aaPredicted RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 ZCWPW2Q504Y3 356 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 SEZ6Q53EL9 994 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 C10orf76Q5T2E6 689 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 ACBD5Q5T8D3 534 aaPredicted RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 RNF43Q68DV7 783 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 STXBP4Q6ZWJ1 553 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 PEX26Q7Z412 305 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 ZBTB33Q86T24 672 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 DAAM2Q86T65 1068 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 THNSL1Q8IYQ7 743 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 LRRC57Q8N9N7 239 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 MGARPQ8TDB4 240 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 BCL7CQ8WUZ0 217 aaPredicted RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 POF1BQ8WVV4 589 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 RNF25Q96BH1 459 aaPredicted RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 MRPL38Q96DV4 380 aaKnown RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 RMDN2Q96LZ7 410 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 NAP1L3Q99457 506 aaPredicted RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 DDX23Q9BUQ8 820 aaKnown RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 TMEM109Q9BVC6 243 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 MRPL4Q9BYD3 311 aaKnown RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 ZDHHC18Q9NUE0 388 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 DNAAF2Q9NVR5 837 aaKnown RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 ATXN10Q9UBB4 475 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 PARP2Q9UGN5 583 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 ADAMTS1Q9UHI8 967 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 TNFSF13BQ9Y275 285 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 RWDD3Q9Y3V2 267 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 PCDHB12Q9Y5F1 795 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 PCDHGA4Q9Y5G9 962 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 BDP1A6H8Y1 2624 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 TDRD15B5MCY1 1934 aaKnown RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 TISP43B9A030 160 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 K7ENM7 598 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 HGSO14964 777 aaPredicted RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 CLIC2O15247 247 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 EIF3DO15371 548 aaKnown RBP eCLIP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 CALUO43852 315 aaPredicted RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 RECQL4O94761 1208 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 GALTP07902 379 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 PROZP22891 400 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 POLR2FP61218 127 aaKnown RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 DR1Q01658 176 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 POU5F1Q01860 360 aaKnown RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 ARID5AQ03989 594 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 KCNMA1Q12791 1236 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 MYBPC3Q14896 1274 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 LRRC14Q15048 493 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 ASIC2Q16515 512 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 PTPROQ16827 1216 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 BMT2Q1RMZ1 405 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 WASHC2DQ5SRD0 308 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 FOXB2Q5VYV0 432 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 INTS8Q75QN2 995 aaKnown RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 LCA5Q86VQ0 697 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 SYCP3Q8IZU3 236 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 ARHGAP18Q8N392 663 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 FAM13CQ8NE31 585 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 EPS8L3Q8TE67 593 aaKnown RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 UCMAQ8WVF2 138 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 GBP5Q96PP8 586 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 NDNQ99608 321 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 ERP44Q9BS26 406 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 CDT1Q9H211 546 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 MMADHCQ9H3L0 296 aaPredicted RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 GOLPH3Q9H4A6 298 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 STOML1Q9UBI4 398 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 BLOC1S6Q9UL45 172 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 H0Y3Z8 333 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 PDXKO00764 312 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 PTGESO14684 152 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 RASGRF2O14827 1237 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 TGFB1I1O43294 461 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 PENKP01210 267 aaPredicted RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 AFPP02771 609 aaKnown RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 HARSP12081 509 aaKnown RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 LAG3P18627 525 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 GSTT1P30711 240 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 SLCO1A2P46721 670 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 SLC11A1P49279 550 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 ALDH7A1P49419 539 aaKnown RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 SCNN1BP51168 640 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 CACNA2D1P54289 1103 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 PLTPP55058 493 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 TFF2Q03403 129 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 AUHQ13825 339 aaKnown RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 RCN2Q14257 317 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 SETDB1Q15047 1291 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 ZRSR2Q15696 482 aaKnown RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 ENOX2Q16206 610 aaKnown RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 PPP2R5EQ16537 467 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 DBN1Q16643 649 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 ZNF568Q3ZCX4 644 aa8.03□□□□□ -1.12
LIMA1-216ENST00000552909 PABPC1LQ4VXU2 614 aaKnown RBP8.03□□□□□ -1.12
LIMA1-216ENST00000552909 TNFAIP8L3Q5GJ75 292 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms