RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 TMEM110Q86TL2 294 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 VPS36Q86VN1 386 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 NDRG1Q92597 394 aaKnown RBP22.31■■□□□ 1.16
VPS29-206ENST00000549578 TCEAL4Q96EI5 215 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 MIS12Q9H081 205 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 COG5Q9UP83 839 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 USP15Q9Y4E8 981 aaPredicted RBP22.31■■□□□ 1.16
VPS29-206ENST00000549578 A0A087X0T9 212 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 FAM92AA1XBS5 289 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 GRXCR2A6NFK2 248 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 TADA3O75528 432 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 FAM228BP0C875 321 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 GJA1P17302 382 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 ACADSBP45954 432 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 NSFP46459 744 aaKnown RBP22.3■■□□□ 1.16
VPS29-206ENST00000549578 CDK17Q00537 523 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 CENPCQ03188 943 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 MAPK8IP2Q13387 824 aaPredicted RBP22.3■■□□□ 1.16
VPS29-206ENST00000549578 CYP4A22Q5TCH4 519 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 GAREM2Q75VX8 874 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 TMEM150AQ86TG1 271 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 ERICH1Q86X53 443 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 DNAAF5Q86Y56 855 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 SCUBE3Q8IX30 993 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 CLEC4CQ8WTT0 213 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 RIPOR3Q96MK2 946 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 SLITRK1Q96PX8 696 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 DEF6Q9H4E7 631 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 SYNCQ9H7C4 482 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 NHEJ1Q9H9Q4 299 aaPredicted RBP22.3■■□□□ 1.16
VPS29-206ENST00000549578 COMMD8Q9NX08 183 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 GMIPQ9P107 970 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 UXTQ9UBK9 157 aaPredicted RBP22.3■■□□□ 1.16
VPS29-206ENST00000549578 SCML2Q9UQR0 700 aa22.3■■□□□ 1.16
VPS29-206ENST00000549578 SSU72P8A0A1W2PR75 194 aa22.29■■□□□ 1.16
VPS29-206ENST00000549578 A0A1W2PRU2 124 aa22.29■■□□□ 1.16
VPS29-206ENST00000549578 ZBED1O96006 694 aa22.29■■□□□ 1.16
VPS29-206ENST00000549578 PGFP49763 221 aa22.29■■□□□ 1.16
VPS29-206ENST00000549578 GSDMDP57764 484 aa22.29■■□□□ 1.16
VPS29-206ENST00000549578 TFF2Q03403 129 aa22.29■■□□□ 1.16
VPS29-206ENST00000549578 MMS22LQ6ZRQ5 1243 aa22.29■■□□□ 1.16
VPS29-206ENST00000549578 LEMD2Q8NC56 503 aa22.29■■□□□ 1.16
VPS29-206ENST00000549578 IPO4Q8TEX9 1081 aaKnown RBP22.29■■□□□ 1.16
VPS29-206ENST00000549578 C11orf70Q9BRQ4 267 aa22.29■■□□□ 1.16
VPS29-206ENST00000549578 WDR6Q9NNW5 1121 aaKnown RBP22.29■■□□□ 1.16
VPS29-206ENST00000549578 CYLDQ9NQC7 956 aa22.29■■□□□ 1.16
VPS29-206ENST00000549578 CNGB3Q9NQW8 809 aa22.29■■□□□ 1.16
VPS29-206ENST00000549578 CHORDC1Q9UHD1 332 aaPredicted RBP22.29■■□□□ 1.16
VPS29-206ENST00000549578 CLUHO75153 1309 aa22.29■■□□□ 1.16
VPS29-206ENST00000549578 PAPSS1O43252 624 aaPredicted RBP22.28■■□□□ 1.16
VPS29-206ENST00000549578 F11P03951 625 aa22.28■■□□□ 1.16
VPS29-206ENST00000549578 MMP8P22894 467 aa22.28■■□□□ 1.16
VPS29-206ENST00000549578 MTHFRP42898 656 aa22.28■■□□□ 1.16
VPS29-206ENST00000549578 GFPT1Q06210 699 aaPredicted RBP22.28■■□□□ 1.16
VPS29-206ENST00000549578 SMAD4Q13485 552 aaKnown RBP22.28■■□□□ 1.16
VPS29-206ENST00000549578 CBX2Q14781 532 aaPredicted RBP22.28■■□□□ 1.16
VPS29-206ENST00000549578 ASTE1Q2TB18 679 aaPredicted RBP22.28■■□□□ 1.16
VPS29-206ENST00000549578 PRSS36Q5K4E3 855 aa22.28■■□□□ 1.16
VPS29-206ENST00000549578 PM20D1Q6GTS8 502 aa22.28■■□□□ 1.16
VPS29-206ENST00000549578 ACAD10Q6JQN1 1059 aa22.28■■□□□ 1.16
VPS29-206ENST00000549578 ITFG1Q8TB96 612 aa22.28■■□□□ 1.16
VPS29-206ENST00000549578 SHKBP1Q8TBC3 707 aa22.28■■□□□ 1.16
VPS29-206ENST00000549578 SUSD6Q92537 303 aa22.28■■□□□ 1.16
VPS29-206ENST00000549578 CCDC42Q96M95 316 aa22.28■■□□□ 1.16
VPS29-206ENST00000549578 ATXN3LQ9H3M9 355 aa22.28■■□□□ 1.16
VPS29-206ENST00000549578 POMKQ9H5K3 350 aa22.28■■□□□ 1.16
VPS29-206ENST00000549578 MRPS23Q9Y3D9 190 aaKnown RBP22.28■■□□□ 1.16
VPS29-206ENST00000549578 MBTPS2O43462 519 aa22.27■■□□□ 1.16
VPS29-206ENST00000549578 MOSPD3O75425 235 aa22.27■■□□□ 1.16
VPS29-206ENST00000549578 FECHP22830 423 aa22.27■■□□□ 1.16
VPS29-206ENST00000549578 FSHRP23945 695 aa22.27■■□□□ 1.16
VPS29-206ENST00000549578 CDC25CP30307 473 aa22.27■■□□□ 1.16
VPS29-206ENST00000549578 DAOAP59103 153 aa22.27■■□□□ 1.16
VPS29-206ENST00000549578 CYP4F8P98187 520 aa22.27■■□□□ 1.16
VPS29-206ENST00000549578 LEXMQ3ZCV2 418 aa22.27■■□□□ 1.16
VPS29-206ENST00000549578 FAM183BPQ6ZVS7 135 aa22.27■■□□□ 1.16
VPS29-206ENST00000549578 BHLHA9Q7RTU4 235 aa22.27■■□□□ 1.16
VPS29-206ENST00000549578 PHF13Q86YI8 300 aaPredicted RBP22.27■■□□□ 1.16
VPS29-206ENST00000549578 MSANTD4Q8NCY6 345 aa22.27■■□□□ 1.16
VPS29-206ENST00000549578 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.27■■□□□ 1.16
VPS29-206ENST00000549578 ING5Q8WYH8 240 aa22.27■■□□□ 1.16
VPS29-206ENST00000549578 C18orf8Q96DM3 657 aa22.27■■□□□ 1.16
VPS29-206ENST00000549578 GCNAQ96QF7 691 aa22.27■■□□□ 1.16
VPS29-206ENST00000549578 NMUR1Q9HB89 426 aa22.27■■□□□ 1.16
VPS29-206ENST00000549578 AVENQ9NQS1 362 aaPredicted RBP22.27■■□□□ 1.16
VPS29-206ENST00000549578 OBSL1O75147 1896 aa22.27■■□□□ 1.16
VPS29-206ENST00000549578 AKR1B10O60218 316 aa22.26■■□□□ 1.15
VPS29-206ENST00000549578 FBXO21O94952 628 aa22.26■■□□□ 1.15
VPS29-206ENST00000549578 ABL1P00519 1130 aa22.26■■□□□ 1.15
VPS29-206ENST00000549578 CEBPBP17676 345 aa22.26■■□□□ 1.15
VPS29-206ENST00000549578 PTP4A2Q12974 167 aa22.26■■□□□ 1.15
VPS29-206ENST00000549578 GET4Q7L5D6 327 aaPredicted RBP22.26■■□□□ 1.15
VPS29-206ENST00000549578 PIWIL1Q96J94 861 aaKnown RBP22.26■■□□□ 1.15
VPS29-206ENST00000549578 PDLIM2Q96JY6 352 aa22.26■■□□□ 1.15
VPS29-206ENST00000549578 BAG1Q99933 345 aaPredicted RBP22.26■■□□□ 1.15
VPS29-206ENST00000549578 SPTLC3Q9NUV7 552 aa22.26■■□□□ 1.15
VPS29-206ENST00000549578 TRPM5Q9NZQ8 1165 aa22.26■■□□□ 1.15
VPS29-206ENST00000549578 ADAM22Q9P0K1 906 aa22.26■■□□□ 1.15
VPS29-206ENST00000549578 NAGPAQ9UK23 515 aa22.26■■□□□ 1.15
VPS29-206ENST00000549578 A0A1W2PQH9 124 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms