RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 CDO1Q16878 200 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 ASTE1Q2TB18 679 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 SCARA5Q6ZMJ2 495 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 KCNK18Q7Z418 384 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 MCUQ8NE86 351 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 THAP3Q8WTV1 239 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 MTBPQ96DY7 904 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 FERMT1Q9BQL6 677 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 DHX36Q9H2U1 1008 aaKnown RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 CDC42EP4Q9H3Q1 356 aaKnown RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 DDX4Q9NQI0 724 aaKnown RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 DDX18Q9NVP1 670 aaKnown RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 NXF1Q9UBU9 619 aaKnown RBP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 PHTF1Q9UMS5 762 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 CYP8B1Q9UNU6 501 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.73□□□□□ -1.49
LIMA1-203ENST00000547825 PRKAB1Q9Y478 270 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 PLIN4Q96Q06 1357 aa5.73□□□□□ -1.49
LIMA1-203ENST00000547825 A0A1W2PQJ5 194 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 LRRIQ4A6NIV6 560 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 WDR64B1ANS9 1081 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 FOXN3O00409 490 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 LPXNO60711 386 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 ATP9AO75110 1047 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 PEX14O75381 377 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 SEC24DO94855 1032 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 ALAS1P13196 640 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 KRT4P19013 534 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 TCN1P20061 433 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 LIG4P49917 911 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 PHEXP78562 749 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 RPL6Q02878 288 aaKnown RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 ICA1Q05084 483 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 RRP1BQ14684 758 aaKnown RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 CERKLQ49MI3 558 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 TAF1BQ53T94 588 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 BRDTQ58F21 947 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 SNX30Q5VWJ9 437 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 GDF6Q6KF10 455 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 CDC42EP5Q6NZY7 148 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 RHPN2Q8IUC4 686 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 AGGF1Q8N302 714 aaeCLIP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 WDR89Q96FK6 387 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 ATXN7L3BQ96GX2 97 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 SNF8Q96H20 258 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 SCYL1Q96KG9 808 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 LRGUKQ96M69 825 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 REEP2Q9BRK0 252 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 ZNF577Q9BSK1 485 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 AMNQ9BXJ7 453 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 Q9H521 79 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 SLCO1B3Q9NPD5 702 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 ACP6Q9NPH0 428 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 GDF3Q9NR23 364 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 ARMCX1Q9P291 453 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 AJAP1Q9UKB5 411 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 SIK3Q9Y2K2 1263 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 SLC35F4A4IF30 521 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 PHF2O75151 1096 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 NOL4O94818 638 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 HTR3BO95264 441 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 GHRHP01286 108 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 LMNAP02545 664 aaKnown RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 ARNTP27540 789 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 CACNA2D1P54289 1103 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 HTRA3P83110 453 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 ASPHQ12797 758 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 GRB10Q13322 594 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 DYNC1I2Q13409 638 aaKnown RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 MED21Q13503 144 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 KRT81Q14533 505 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 ANGEL2Q5VTE6 544 aaKnown RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 CENPPQ6IPU0 288 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 DARS2Q6PI48 645 aaKnown RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 TRMT10CQ7L0Y3 403 aaKnown RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 PCGF5Q86SE9 256 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 CRLF3Q8IUI8 442 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 APOBEC3FQ8IUX4 373 aaKnown RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 PDZD8Q8NEN9 1154 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 SLC7A3Q8WY07 619 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 PLPPR2Q96GM1 343 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 FAM81BQ96LP2 452 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 ACAP3Q96P50 834 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 AGPAT1Q99943 283 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 EDEM3Q9BZQ6 932 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 TMEM117Q9H0C3 514 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 SMG9Q9H0W8 520 aaKnown RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 SUDS3Q9H7L9 328 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 GGA3Q9NZ52 723 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 SERPINB13Q9UIV8 391 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 PRR12Q9ULL5 1215 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 EXOC7Q9UPT5 735 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 HEY1Q9Y5J3 304 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 SOX1O00570 391 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-203ENST00000547825 ADCY3O60266 1144 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 CCDC22O60826 627 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 RNF8O76064 485 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 TTLL1O95922 423 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 CTSBP07858 339 aa5.72□□□□□ -1.49
LIMA1-203ENST00000547825 DRD4P21917 467 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms