RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 FAM213AQ9BRX8 229 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 TTLL2Q9BWV7 592 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 ST6GALNAC4Q9H4F1 302 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 CALCOCO1Q9P1Z2 691 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 MAGEC2Q9UBF1 373 aaPredicted RBP13.62□□□□□ -0.23
SCAF11-208ENST00000546534 ADAMTS9Q9P2N4 1935 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 GCN1Q92616 2671 aaKnown RBP13.62□□□□□ -0.23
SCAF11-208ENST00000546534 PCDH15Q96QU1 1955 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 HELZP42694 1942 aaKnown RBP13.61□□□□□ -0.23
SCAF11-208ENST00000546534 PLXND1Q9Y4D7 1925 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 IGHV1OR15-9A0A0B4J2B8 117 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 GJB3O75712 270 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 ZIC2O95409 532 aaPredicted RBP13.61□□□□□ -0.23
SCAF11-208ENST00000546534 OLFM2O95897 454 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 SYPP08247 313 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 KRT19P08727 400 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 LMO2P25791 158 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 GRIK1P39086 918 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 PSMC1P62191 440 aaKnown RBP13.61□□□□□ -0.23
SCAF11-208ENST00000546534 SLC14A1Q13336 389 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 POSTNQ15063 836 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 LY6G5CQ5SRR4 150 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 ARL6IP4Q66PJ3 421 aaKnown RBP13.61□□□□□ -0.23
SCAF11-208ENST00000546534 VSTM1Q6UX27 236 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 BRSK2Q8IWQ3 736 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 TOP6BLQ8N6T0 577 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 MDM1Q8TC05 714 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 CACTINQ8WUQ7 758 aaKnown RBP13.61□□□□□ -0.23
SCAF11-208ENST00000546534 RAD54LQ92698 747 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 MYLPFQ96A32 169 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 CALML4Q96GE6 196 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 BBC3Q96PG8 261 aaPredicted RBP13.61□□□□□ -0.23
SCAF11-208ENST00000546534 SYT15Q9BQS2 421 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 CRTAC1Q9NQ79 661 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 SIX4Q9UIU6 781 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 ITGA11Q9UKX5 1188 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 PCDHB9Q9Y5E1 797 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 IGSF10Q6WRI0 2623 aa13.61□□□□□ -0.23
SCAF11-208ENST00000546534 A0A1W2PQD8 194 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 TBC1D3BA6NDS4 549 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.6□□□□□ -0.23
SCAF11-208ENST00000546534 SLC26A4O43511 780 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 ABL1P00519 1130 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 OAS1P00973 400 aaKnown RBP13.6□□□□□ -0.23
SCAF11-208ENST00000546534 UBA7P41226 1012 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 WASP42768 502 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 MCTP1Q6DN14 999 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 ZNF720Q7Z2F6 126 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 ZNF513Q8N8E2 541 aaPredicted RBP13.6□□□□□ -0.23
SCAF11-208ENST00000546534 NAT16Q8N8M0 369 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 TRIML1Q8N9V2 468 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 SAAL1Q96ER3 474 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 ZSCAN31Q96LW9 406 aaPredicted RBP13.6□□□□□ -0.23
SCAF11-208ENST00000546534 AK8Q96MA6 479 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 CEP295NLQ96MC4 621 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 HSPA12BQ96MM6 686 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 HCN2Q9UL51 889 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 CDH9Q9ULB4 789 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 CYP8B1Q9UNU6 501 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 RAXQ9Y2V3 346 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 FREM2Q5SZK8 3169 aa13.6□□□□□ -0.23
SCAF11-208ENST00000546534 SETXQ7Z333 2677 aaKnown RBP13.59□□□□□ -0.23
SCAF11-208ENST00000546534 A0A1W2PQF6 199 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 ANXA13P27216 316 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 PPP3CCP48454 512 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 RBP5P82980 135 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 CYP27A1Q02318 531 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 KCNA1Q09470 495 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 PLEKHG6Q3KR16 790 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 DPH6Q7L8W6 267 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 TRMT11Q7Z4G4 463 aaKnown RBP13.59□□□□□ -0.23
SCAF11-208ENST00000546534 LIMS2Q7Z4I7 341 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 SFR1Q86XK3 245 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 MIB1Q86YT6 1006 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 NAXDQ8IW45 347 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 ETFBKMTQ8IXQ9 262 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 KBTBD7Q8WVZ9 684 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 HVCN1Q96D96 273 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 LRIG1Q96JA1 1093 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 STRA6Q9BX79 667 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 PDE11AQ9HCR9 933 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 RBAKQ9NYW8 714 aaPredicted RBP13.59□□□□□ -0.23
SCAF11-208ENST00000546534 TBC1D14Q9P2M4 693 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 APOBEC2Q9Y235 224 aaKnown RBP13.59□□□□□ -0.23
SCAF11-208ENST00000546534 LAMA5O15230 3695 aa13.59□□□□□ -0.23
SCAF11-208ENST00000546534 E2F8A0AVK6 867 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 GOLGA8IPA6NC78 632 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 GOLGA8JA6NMD2 632 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 F8VP50 259 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 TRIM24O15164 1050 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 MAP3K7O43318 606 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 ZNF217O75362 1048 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 TULP3O75386 442 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 PDGFRBP09619 1106 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 MBL2P11226 248 aaPredicted RBP13.58□□□□□ -0.24
SCAF11-208ENST00000546534 HOXB2P14652 356 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 NDUFV2P19404 249 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 NTSR1P30989 418 aa13.58□□□□□ -0.24
SCAF11-208ENST00000546534 NOP14P78316 857 aaKnown RBP13.58□□□□□ -0.24
SCAF11-208ENST00000546534 GAD2Q05329 585 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms