RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 SLC27A1Q6PCB7 646 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 FUKQ8N0W3 1084 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 PDIK1LQ8N165 341 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 BRI3BPQ8WY22 251 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 KHSRPQ92945 711 aaKnown RBP eCLIP18.82■□□□□ 0.6
VIM-209ENST00000544301 FAM49BQ9NUQ9 324 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 TUBGCP4Q9UGJ1 667 aa18.82■□□□□ 0.6
VIM-209ENST00000544301 KAT6AQ92794 2004 aa18.81■□□□□ 0.6
VIM-209ENST00000544301 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.81■□□□□ 0.6
VIM-209ENST00000544301 IL4RP24394 825 aa18.81■□□□□ 0.6
VIM-209ENST00000544301 RPA3P35244 121 aaPredicted RBP18.81■□□□□ 0.6
VIM-209ENST00000544301 SLC6A3Q01959 620 aa18.81■□□□□ 0.6
VIM-209ENST00000544301 RNASELQ05823 741 aaKnown RBP18.81■□□□□ 0.6
VIM-209ENST00000544301 MTM1Q13496 603 aa18.81■□□□□ 0.6
VIM-209ENST00000544301 KRT81Q14533 505 aa18.81■□□□□ 0.6
VIM-209ENST00000544301 C1orf228Q6PIY5 440 aa18.81■□□□□ 0.6
VIM-209ENST00000544301 CATSPER4Q7RTX7 472 aa18.81■□□□□ 0.6
VIM-209ENST00000544301 TMEM110Q86TL2 294 aa18.81■□□□□ 0.6
VIM-209ENST00000544301 MAP7D3Q8IWC1 876 aa18.81■□□□□ 0.6
VIM-209ENST00000544301 FBF1Q8TES7 1133 aa18.81■□□□□ 0.6
VIM-209ENST00000544301 SLC35F5Q8WV83 523 aa18.81■□□□□ 0.6
VIM-209ENST00000544301 C18orf25Q96B23 403 aaPredicted RBP18.81■□□□□ 0.6
VIM-209ENST00000544301 DHRS4Q9BTZ2 278 aa18.81■□□□□ 0.6
VIM-209ENST00000544301 GCOM2Q9BZD3 368 aaPredicted RBP18.81■□□□□ 0.6
VIM-209ENST00000544301 FAM49AQ9H0Q0 323 aaPredicted RBP18.81■□□□□ 0.6
VIM-209ENST00000544301 ACSS3Q9H6R3 686 aa18.81■□□□□ 0.6
VIM-209ENST00000544301 ZNF408Q9H9D4 720 aa18.81■□□□□ 0.6
VIM-209ENST00000544301 CDHR5Q9HBB8 845 aa18.81■□□□□ 0.6
VIM-209ENST00000544301 GGT7Q9UJ14 662 aa18.81■□□□□ 0.6
VIM-209ENST00000544301 RRN3P2A6NIE6 340 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 ADCY6O43306 1168 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 TYROBPO43914 113 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 GPR32O75388 356 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 GABBR2O75899 941 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 SETSIPP0DME0 302 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 GTF2A2P52657 109 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 SPARCL1Q14515 664 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 PDK2Q15119 407 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 BOLA3Q53S33 107 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 ZC3H12AQ5D1E8 599 aaKnown RBP18.8■□□□□ 0.6
VIM-209ENST00000544301 SCYL2Q6P3W7 929 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 APBB1IPQ7Z5R6 666 aaPredicted RBP18.8■□□□□ 0.6
VIM-209ENST00000544301 SCUBE3Q8IX30 993 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 PALM2Q8IXS6 379 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 PLD5Q8N7P1 536 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.8■□□□□ 0.6
VIM-209ENST00000544301 FAM172AQ8WUF8 416 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 PLCD4Q9BRC7 762 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 TINF2Q9BSI4 451 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 ADAM33Q9BZ11 813 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 ABHD16BQ9H3Z7 469 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 NGRNQ9NPE2 291 aaKnown RBP18.8■□□□□ 0.6
VIM-209ENST00000544301 GPATCH2LQ9NWQ4 482 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 HES2Q9Y543 173 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 RALGAPA2Q2PPJ7 1873 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 H7C0C1 242 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 UBOX5O94941 541 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 ATP5OP48047 213 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 KLHL38Q2WGJ6 581 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 GALNTL6Q49A17 601 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 IQSEC1Q6DN90 963 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 CYB5D1Q6P9G0 228 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 ADGRD1Q6QNK2 874 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 ANKRD23Q86SG2 305 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 LRRC52Q8N7C0 313 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 BEST2Q8NFU1 509 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 TEKT4Q8WW24 435 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 USP6NLQ92738 828 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 GRAMD1AQ96CP6 724 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 PITPNM3Q9BZ71 974 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 USP29Q9HBJ7 922 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 PCDH18Q9HCL0 1135 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 GRID1Q9ULK0 1009 aa18.8■□□□□ 0.6
VIM-209ENST00000544301 PAPSS1O43252 624 aaPredicted RBP18.79■□□□□ 0.6
VIM-209ENST00000544301 TSHRP16473 764 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 SDC4P31431 198 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 YARSP54577 528 aaKnown RBP18.79■□□□□ 0.6
VIM-209ENST00000544301 KCNJ11Q14654 390 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 SESTD1Q86VW0 696 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 PQLC3Q8N755 202 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 PAFAH2Q99487 392 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 LPIN3Q9BQK8 851 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 HESX1Q9UBX0 185 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 UNCXA6NJT0 531 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 PIAS1O75925 651 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 CA4P22748 312 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 SLC1A5Q15758 541 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 GLRA4Q5JXX5 417 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 NOTUMQ6P988 496 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 ALKAL1Q6UXT8 129 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 RGS9BPQ6ZS82 235 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 FAM47EQ6ZV65 393 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 IGDCC3Q8IVU1 814 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 PPP1R13LQ8WUF5 828 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 SYT17Q9BSW7 474 aa18.79■□□□□ 0.6
VIM-209ENST00000544301 SSU72Q9NP77 194 aaKnown RBP18.79■□□□□ 0.6
VIM-209ENST00000544301 APOL1O14791 398 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 KRT4P19013 534 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 CA9Q16790 459 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 SOWAHAQ2M3V2 549 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms