RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 COG7P83436 770 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 PDE1CQ14123 709 aaPredicted RBP11.56□□□□□ -0.56
CDH3-203ENST00000542274 ITIH4Q14624 930 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 TDRD12Q587J7 1177 aaKnown RBP11.56□□□□□ -0.56
CDH3-203ENST00000542274 FIGNQ5HY92 759 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 TREML2Q5T2D2 321 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 KIAA1614Q5VZ46 1190 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 HGSNATQ68CP4 663 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 GJB7Q6PEY0 223 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 SPATA2LQ8IUW3 424 aaPredicted RBP11.56□□□□□ -0.56
CDH3-203ENST00000542274 MYCT1Q8N699 235 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 NLRP7Q8WX94 980 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 LXNQ9BS40 222 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 ZNF408Q9H9D4 720 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 NTN4Q9HB63 628 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 CD93Q9NPY3 652 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 KCNH7Q9NS40 1196 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 SLC12A6Q9UHW9 1150 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 AJAP1Q9UKB5 411 aaPredicted RBP11.56□□□□□ -0.56
CDH3-203ENST00000542274 RNF112Q9ULX5 631 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 CLEC11AQ9Y240 323 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 PAPPA2Q9BXP8 1791 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 GRXCR2A6NFK2 248 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 SYCE1LA8MT33 242 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 H7C0C1 242 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 TGFB1I1O43294 461 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 MOCS3O95396 460 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 POLR2CP19387 275 aaPredicted RBP11.56□□□□□ -0.56
CDH3-203ENST00000542274 GALNT1Q10472 559 aaPredicted RBP11.56□□□□□ -0.56
CDH3-203ENST00000542274 GSTA3Q16772 222 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 CLVS2Q5SYC1 327 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 NSMFQ6X4W1 530 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 C1orf186Q6ZWK4 172 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 CROCCP3Q8IVE0 287 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 NUDCD1Q96RS6 583 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 RAB17Q9H0T7 212 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 HAUS4Q9H6D7 363 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 POLG2Q9UHN1 485 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 PCDHB4Q9Y5E5 795 aa11.56□□□□□ -0.56
CDH3-203ENST00000542274 ZMYM2Q9UBW7 1377 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 OR6B1O95007 311 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 PRLP01236 227 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 MYCLP12524 364 aaPredicted RBP11.55□□□□□ -0.56
CDH3-203ENST00000542274 VHLP40337 213 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 COPAP53621 1224 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 RPS6P62753 249 aaKnown RBP11.55□□□□□ -0.56
CDH3-203ENST00000542274 CD300CQ08708 224 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 ANKRD39Q53RE8 183 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 FAM26DQ5JW98 314 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 NOL9Q5SY16 702 aaKnown RBP11.55□□□□□ -0.56
CDH3-203ENST00000542274 SHEQ5VZ18 495 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 METTL2BQ6P1Q9 378 aaKnown RBP11.55□□□□□ -0.56
CDH3-203ENST00000542274 MILR1Q7Z6M3 343 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 DDX42Q86XP3 938 aaKnown RBP eCLIP11.55□□□□□ -0.56
CDH3-203ENST00000542274 ANKRD53Q8N9V6 530 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 TTLQ8NG68 377 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 STON2Q8WXE9 905 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 BTBD6Q96KE9 485 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 TSNARE1Q96NA8 513 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 IFIH1Q9BYX4 1025 aaKnown RBP11.55□□□□□ -0.56
CDH3-203ENST00000542274 MARCH7Q9H992 704 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 SMARCAL1Q9NZC9 954 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 NR2E3Q9Y5X4 410 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 CSADQ9Y600 493 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 RBBP6Q7Z6E9 1792 aaKnown RBP11.55□□□□□ -0.56
CDH3-203ENST00000542274 NDC80O14777 642 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 BUB1O43683 1085 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 DKC1O60832 514 aaKnown RBP eCLIP11.55□□□□□ -0.56
CDH3-203ENST00000542274 FAM13AO94988 1023 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 SLC4A1P02730 911 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 PTGS2P35354 604 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 HSPA9P38646 679 aaKnown RBP11.55□□□□□ -0.56
CDH3-203ENST00000542274 MTHFRP42898 656 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 EPHB4P54760 987 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 RAPGEF1Q13905 1077 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 SMU1Q2TAY7 513 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 FYB2Q5VWT5 728 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 MAP1SQ66K74 1059 aaPredicted RBP11.55□□□□□ -0.56
CDH3-203ENST00000542274 GADL1Q6ZQY3 521 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 ENDOVQ8N8Q3 282 aaKnown RBP11.55□□□□□ -0.56
CDH3-203ENST00000542274 RNF169Q8NCN4 708 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 CAGE1Q8TC20 777 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 FIZ1Q96SL8 496 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 MXRA8Q9BRK3 442 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 EHD2Q9NZN4 543 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 PCDHA13Q9Y5I0 950 aa11.55□□□□□ -0.56
CDH3-203ENST00000542274 NR3C1P04150 777 aa11.54□□□□□ -0.56
CDH3-203ENST00000542274 VAV2P52735 878 aa11.54□□□□□ -0.56
CDH3-203ENST00000542274 USP50Q70EL3 339 aaPredicted RBP11.54□□□□□ -0.56
CDH3-203ENST00000542274 CEP68Q76N32 757 aa11.54□□□□□ -0.56
CDH3-203ENST00000542274 CPSF7Q8N684 471 aaKnown RBP11.54□□□□□ -0.56
CDH3-203ENST00000542274 RDH13Q8NBN7 331 aa11.54□□□□□ -0.56
CDH3-203ENST00000542274 SYTL5Q8TDW5 730 aaPredicted RBP11.54□□□□□ -0.56
CDH3-203ENST00000542274 TTC25Q96NG3 672 aa11.54□□□□□ -0.56
CDH3-203ENST00000542274 INPP4AQ96PE3 977 aaPredicted RBP11.54□□□□□ -0.56
CDH3-203ENST00000542274 ADNPQ9H2P0 1102 aa11.54□□□□□ -0.56
CDH3-203ENST00000542274 ZFYVE28Q9HCC9 887 aa11.54□□□□□ -0.56
CDH3-203ENST00000542274 RNF146Q9NTX7 359 aa11.54□□□□□ -0.56
CDH3-203ENST00000542274 KCNN3Q9UGI6 736 aa11.54□□□□□ -0.56
CDH3-203ENST00000542274 DMGDHQ9UI17 866 aaKnown RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms