RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 KCNH2Q12809 1159 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 RUNX3Q13761 415 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 PDGFRLQ15198 375 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 EML3Q32P44 896 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 ZNF394Q53GI3 561 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 TRIM68Q6AZZ1 485 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 RBM43Q6ZSC3 357 aaKnown RBP15.01□□□□□ -0.01
USP28-209ENST00000540925 GPT2Q8TD30 523 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 IPO9Q96P70 1041 aaKnown RBP15.01□□□□□ -0.01
USP28-209ENST00000540925 NUP62CLQ9H1M0 184 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 CHRDQ9H2X0 955 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 FBXO44Q9H4M3 255 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 EBF3Q9H4W6 596 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 GMIPQ9P107 970 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 CHORDC1Q9UHD1 332 aaPredicted RBP15.01□□□□□ -0.01
USP28-209ENST00000540925 SCML2Q9UQR0 700 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 USP3Q9Y6I4 520 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 CACNA1AO00555 2505 aa15□□□□□ -0.01
USP28-209ENST00000540925 LEFTY2O00292 366 aa15□□□□□ -0.01
USP28-209ENST00000540925 NCAM2O15394 837 aa15□□□□□ -0.01
USP28-209ENST00000540925 COCHO43405 550 aa15□□□□□ -0.01
USP28-209ENST00000540925 AFPP02771 609 aaKnown RBP15□□□□□ -0.01
USP28-209ENST00000540925 TRIM21P19474 475 aaKnown RBP15□□□□□ -0.01
USP28-209ENST00000540925 KPNA1P52294 538 aaPredicted RBP15□□□□□ -0.01
USP28-209ENST00000540925 GCNT1Q02742 428 aa15□□□□□ -0.01
USP28-209ENST00000540925 CCINQ13939 588 aa15□□□□□ -0.01
USP28-209ENST00000540925 GAS6Q14393 721 aa15□□□□□ -0.01
USP28-209ENST00000540925 DPCR1Q3MIW9 517 aa15□□□□□ -0.01
USP28-209ENST00000540925 RAB41Q5JT25 222 aa15□□□□□ -0.01
USP28-209ENST00000540925 TTC30AQ86WT1 665 aa15□□□□□ -0.01
USP28-209ENST00000540925 EHBP1Q8NDI1 1231 aa15□□□□□ -0.01
USP28-209ENST00000540925 NELL1Q92832 810 aa15□□□□□ -0.01
USP28-209ENST00000540925 ATOH1Q92858 354 aaPredicted RBP15□□□□□ -0.01
USP28-209ENST00000540925 HEXIM2Q96MH2 286 aaKnown RBP15□□□□□ -0.01
USP28-209ENST00000540925 UBXN6Q9BZV1 441 aa15□□□□□ -0.01
USP28-209ENST00000540925 PRMT8Q9NR22 394 aaPredicted RBP15□□□□□ -0.01
USP28-209ENST00000540925 FAM86C1Q9NVL1 165 aa15□□□□□ -0.01
USP28-209ENST00000540925 OSER1Q9NX31 292 aa15□□□□□ -0.01
USP28-209ENST00000540925 NDRG2Q9UN36 371 aaKnown RBP15□□□□□ -0.01
USP28-209ENST00000540925 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15□□□□□ -0.01
USP28-209ENST00000540925 CPQQ9Y646 472 aa15□□□□□ -0.01
USP28-209ENST00000540925 FANCMQ8IYD8 2048 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 MYH10P35580 1976 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 FGFR1OPO95684 399 aaKnown RBP14.99□□□□□ -0.01
USP28-209ENST00000540925 CCDC192P0DO97 292 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 TDGF1P13385 188 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 ZNF132P52740 706 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 IFRD2Q12894 506 aaPredicted RBP14.99□□□□□ -0.01
USP28-209ENST00000540925 PKDCCQ504Y2 493 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 HECTD3Q5T447 861 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 CCDC186Q7Z3E2 898 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 ANKRD52Q8NB46 1076 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 TTC8Q8TAM2 541 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 KAT5Q92993 513 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 CNOT6LQ96LI5 555 aaKnown RBP14.99□□□□□ -0.01
USP28-209ENST00000540925 NT5C1BQ96P26 610 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 IER2Q9BTL4 223 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 DNAI2Q9GZS0 605 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 LINC00597Q9H2U6 94 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 CCSER2Q9H7U1 834 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 ECT2Q9H8V3 914 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 CYLDQ9NQC7 956 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 FBXO4Q9UKT5 387 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 CNTN6Q9UQ52 1028 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 WNT6Q9Y6F9 365 aa14.99□□□□□ -0.01
USP28-209ENST00000540925 MYO16Q9Y6X6 1858 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 RNF225M0QZC1 329 aaPredicted RBP14.98□□□□□ -0.01
USP28-209ENST00000540925 O00370 1275 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 TRDMT1O14717 391 aaKnown RBP14.98□□□□□ -0.01
USP28-209ENST00000540925 CYP26A1O43174 497 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 GREM1O60565 184 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 PAEPP09466 180 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 SP9P0CG40 484 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 ERCC5P28715 1186 aaPredicted RBP14.98□□□□□ -0.01
USP28-209ENST00000540925 GJA4P35212 333 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 YWHAEP62258 255 aaKnown RBP14.98□□□□□ -0.01
USP28-209ENST00000540925 LRMPQ12912 555 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 MTAPQ13126 283 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 PON2Q15165 354 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 GAB4Q2WGN9 574 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 ZNF528Q3MIS6 628 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 TMEM196Q5HYL7 178 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 CC2D1AQ6P1N0 951 aaPredicted RBP14.98□□□□□ -0.01
USP28-209ENST00000540925 ARHGEF19Q8IW93 802 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 ZNF276Q8N554 614 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 ATP2A3Q93084 1043 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 KREMEN1Q96MU8 473 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 GBP4Q96PP9 640 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 ZSWIM1Q9BR11 485 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 INTS2Q9H0H0 1204 aaKnown RBP14.98□□□□□ -0.01
USP28-209ENST00000540925 LMAN1LQ9HAT1 526 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 NMUR1Q9HB89 426 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 DUS2Q9NX74 493 aaKnown RBP14.98□□□□□ -0.01
USP28-209ENST00000540925 KIAA1257Q9ULG3 409 aa14.98□□□□□ -0.01
USP28-209ENST00000540925 PTPRZ1P23471 2315 aaPredicted RBP14.98□□□□□ -0.01
USP28-209ENST00000540925 TLR5O60602 858 aa14.97□□□□□ -0.01
USP28-209ENST00000540925 ABL1P00519 1130 aa14.97□□□□□ -0.01
USP28-209ENST00000540925 CETN1Q12798 172 aa14.97□□□□□ -0.01
USP28-209ENST00000540925 CT47A1Q5JQC4 288 aaPredicted RBP14.97□□□□□ -0.01
USP28-209ENST00000540925 DGKKQ5KSL6 1271 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms