RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 CDO1Q16878 200 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 DENND1BQ6P3S1 775 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 ST13P4Q8IZP2 240 aaPredicted RBP11.72□□□□□ -0.53
SYNE1-237ENST00000539504 GSTCDQ8NEC7 633 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.72□□□□□ -0.53
SYNE1-237ENST00000539504 LRRN4Q8WUT4 740 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 ZFAND2BQ8WV99 257 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 GORASP1Q9BQQ3 440 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 HAPLN2Q9GZV7 340 aa11.72□□□□□ -0.53
SYNE1-237ENST00000539504 JPH1Q9HDC5 661 aaPredicted RBP11.72□□□□□ -0.53
SYNE1-237ENST00000539504 ZBTB12Q9Y330 459 aaPredicted RBP11.72□□□□□ -0.53
SYNE1-237ENST00000539504 SRCAPQ6ZRS2 3230 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.71□□□□□ -0.53
SYNE1-237ENST00000539504 E7ESA3 106 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 H0YIN7 160 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 PIK3R2O00459 728 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 APRTP07741 180 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 RAP1GDS1P52306 607 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 HIRAP54198 1017 aaPredicted RBP11.71□□□□□ -0.53
SYNE1-237ENST00000539504 OSTNP61366 133 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 SLC18A2Q05940 514 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 ASPHQ12797 758 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 STX3Q13277 289 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 DYNC1I2Q13409 638 aaKnown RBP11.71□□□□□ -0.53
SYNE1-237ENST00000539504 SMAD1Q15797 465 aaKnown RBP11.71□□□□□ -0.53
SYNE1-237ENST00000539504 ZC3H12AQ5D1E8 599 aaKnown RBP11.71□□□□□ -0.53
SYNE1-237ENST00000539504 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.71□□□□□ -0.53
SYNE1-237ENST00000539504 NR1H4Q96RI1 486 aaPredicted RBP11.71□□□□□ -0.53
SYNE1-237ENST00000539504 FAM192AQ9GZU8 254 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 VCX3BQ9H321 246 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 VCX3AQ9NNX9 186 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 ZNF831Q5JPB2 1677 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 A0A0B4J269 797 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 F8W8V4 182 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 KCNN4O15554 427 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 TNFSF9P41273 254 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 PTPN20Q4JDL3 420 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 SLC27A3Q5K4L6 730 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 SCYL2Q6P3W7 929 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 THNSL1Q8IYQ7 743 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 SLC7A3Q8WY07 619 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 NIF3L1Q9GZT8 377 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 ARHGEF4Q9NR80 690 aa11.71□□□□□ -0.53
SYNE1-237ENST00000539504 CXorf49A8MYA2 514 aaPredicted RBP11.71□□□□□ -0.54
SYNE1-237ENST00000539504 UGT1A9O60656 530 aa11.71□□□□□ -0.54
SYNE1-237ENST00000539504 C6orf222P0C671 652 aaPredicted RBP11.71□□□□□ -0.54
SYNE1-237ENST00000539504 PTPN7P35236 360 aa11.71□□□□□ -0.54
SYNE1-237ENST00000539504 RTP1P59025 263 aa11.71□□□□□ -0.54
SYNE1-237ENST00000539504 ACTR2P61160 394 aa11.71□□□□□ -0.54
SYNE1-237ENST00000539504 CDC16Q13042 620 aa11.71□□□□□ -0.54
SYNE1-237ENST00000539504 ZNF699Q32M78 642 aa11.71□□□□□ -0.54
SYNE1-237ENST00000539504 MEX3CQ5U5Q3 659 aaKnown RBP11.71□□□□□ -0.54
SYNE1-237ENST00000539504 POLNQ7Z5Q5 900 aa11.71□□□□□ -0.54
SYNE1-237ENST00000539504 UGT1A7Q9HAW7 530 aa11.71□□□□□ -0.54
SYNE1-237ENST00000539504 UGT1A10Q9HAW8 530 aa11.71□□□□□ -0.54
SYNE1-237ENST00000539504 UGT1A8Q9HAW9 530 aa11.71□□□□□ -0.54
SYNE1-237ENST00000539504 RNF146Q9NTX7 359 aa11.71□□□□□ -0.54
SYNE1-237ENST00000539504 PLLPQ9Y342 182 aa11.71□□□□□ -0.54
SYNE1-237ENST00000539504 AHDC1Q5TGY3 1603 aaPredicted RBP11.71□□□□□ -0.54
SYNE1-237ENST00000539504 APOC4-APOC2K7ER74 178 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 KRT38O76015 456 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 APOC2P02655 101 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 MIPP30301 263 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 ACTR3P61158 418 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 ARHGAP18Q8N392 663 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 WDTC1Q8N5D0 677 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 RDM1Q8NG50 284 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 JDP2Q8WYK2 163 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 PPP2R3CQ969Q6 453 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 EBF4Q9BQW3 602 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 IRAK4Q9NWZ3 460 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 PDE5AO76074 875 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 CHRNA5P30532 468 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 CLDN10P78369 228 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 SLC25A11Q02978 314 aaKnown RBP11.7□□□□□ -0.54
SYNE1-237ENST00000539504 MED21Q13503 144 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 KRT81Q14533 505 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 WDR75Q8IWA0 830 aaKnown RBP11.7□□□□□ -0.54
SYNE1-237ENST00000539504 SEPT12Q8IYM1 358 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 EBF3Q9H4W6 596 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.7□□□□□ -0.54
SYNE1-237ENST00000539504 GOLGB1Q14789 3259 aaKnown RBP11.7□□□□□ -0.54
SYNE1-237ENST00000539504 CCDC160A6NGH7 325 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 C3orf70A6NLC5 250 aaPredicted RBP11.7□□□□□ -0.54
SYNE1-237ENST00000539504 SPAG6O75602 509 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 ASS1P00966 412 aaKnown RBP11.7□□□□□ -0.54
SYNE1-237ENST00000539504 OSBPP22059 807 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 RAP1GAPP47736 663 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 CNPY1Q3B7I2 92 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 XKR3Q5GH77 459 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 RAPH1Q70E73 1250 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 KIAA0319LQ8IZA0 1049 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 B4GALNT2Q8NHY0 566 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 USP6NLQ92738 828 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 IFT43Q96FT9 208 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 FRMD8P1Q9BZ68 369 aaPredicted RBP11.7□□□□□ -0.54
SYNE1-237ENST00000539504 ZNF518BQ9C0D4 1074 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 DEFB129Q9H1M3 183 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 SLC38A10Q9HBR0 1119 aa11.7□□□□□ -0.54
SYNE1-237ENST00000539504 KCNG1Q9UIX4 513 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms