RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 DUSP9Q99956 384 aaKnown RBP12.24□□□□□ -0.45
RTN3-209ENST00000538995 ECT2Q9H8V3 914 aa12.24□□□□□ -0.45
RTN3-209ENST00000538995 R4GN57 208 aa12.24□□□□□ -0.45
RTN3-209ENST00000538995 GREB1Q4ZG55 1949 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 OTOL1A6NHN0 477 aaPredicted RBP12.23□□□□□ -0.45
RTN3-209ENST00000538995 PPP1R3GB7ZBB8 358 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 LEFTY2O00292 366 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 SLC9A3R1O14745 358 aaPredicted RBP12.23□□□□□ -0.45
RTN3-209ENST00000538995 LMNAP02545 664 aaKnown RBP12.23□□□□□ -0.45
RTN3-209ENST00000538995 TDGF1P13385 188 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 CD44P16070 742 aaKnown RBP12.23□□□□□ -0.45
RTN3-209ENST00000538995 BMP6P22004 513 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 MAP3K7CLP57077 242 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 YWHAEP62258 255 aaKnown RBP12.23□□□□□ -0.45
RTN3-209ENST00000538995 IFRD2Q12894 506 aaPredicted RBP12.23□□□□□ -0.45
RTN3-209ENST00000538995 NR1H3Q13133 447 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 HECTD3Q5T447 861 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 CLEC20AQ6ZU45 233 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 SCAMP5Q8TAC9 235 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 NELFBQ8WX92 580 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 ATRIPQ8WXE1 791 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 CHFRQ96EP1 664 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 CYFIP2Q96F07 1278 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.23□□□□□ -0.451e-6■■■■■ 88.9
RTN3-209ENST00000538995 CISHQ9NSE2 258 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 CPQQ9Y646 472 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 WNT6Q9Y6F9 365 aa12.23□□□□□ -0.45
RTN3-209ENST00000538995 PTPRZ1P23471 2315 aaPredicted RBP12.23□□□□□ -0.45
RTN3-209ENST00000538995 P4HA2O15460 535 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 COCHO43405 550 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 LILRB5O75023 590 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 BEST1O76090 585 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 GNA14O95837 355 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 ABL1P00519 1130 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 MBL2P11226 248 aaPredicted RBP12.22□□□□□ -0.45
RTN3-209ENST00000538995 DRD1P21728 446 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 TBXAS1P24557 533 aaPredicted RBP12.22□□□□□ -0.45
RTN3-209ENST00000538995 ADORA2BP29275 332 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 GJA4P35212 333 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 ANP32AP39687 249 aaKnown RBP12.22□□□□□ -0.45
RTN3-209ENST00000538995 CXCL12P48061 93 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 ZXDBP98169 803 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 PAK1Q13153 545 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 CUL2Q13617 745 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 GAS6Q14393 721 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 CCDC40Q4G0X9 1142 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 FBXO43Q4G163 708 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 ARHGAP17Q68EM7 881 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 KLHL10Q6JEL2 608 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 OTUB2Q96DC9 234 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 TMEM176AQ96HP8 235 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 P2RY13Q9BPV8 354 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 RNF38Q9H0F5 515 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 TLR8Q9NR97 1041 aaKnown RBP12.22□□□□□ -0.45
RTN3-209ENST00000538995 RBM12Q9NTZ6 932 aaKnown RBP12.22□□□□□ -0.45
RTN3-209ENST00000538995 GMIPQ9P107 970 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 SCML2Q9UQR0 700 aa12.22□□□□□ -0.45
RTN3-209ENST00000538995 EP300Q09472 2414 aaPredicted RBP12.21□□□□□ -0.45
RTN3-209ENST00000538995 ANAPC1Q9H1A4 1944 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 GPR179Q6PRD1 2367 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 E2F8A0AVK6 867 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 HHLA1C9JL84 531 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 HOXA6P31267 233 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 FMO5P49326 533 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 RAD23BP54727 409 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 MARSP56192 900 aaKnown RBP12.21□□□□□ -0.45
RTN3-209ENST00000538995 SATB1Q01826 763 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 CETN1Q12798 172 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 ISM2Q6H9L7 571 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 FSTL4Q6MZW2 842 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 Q6ZS52 159 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 SLC4A11Q8NBS3 891 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 TTC16Q8NEE8 873 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 CCDC26Q8TAB7 109 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 CD101Q93033 1021 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 ZFRQ96KR1 1074 aaKnown RBP12.21□□□□□ -0.45
RTN3-209ENST00000538995 ARID3AQ99856 593 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 DUSP16Q9BY84 665 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 UBXN6Q9BZV1 441 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 EPC1Q9H2F5 836 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 CYLDQ9NQC7 956 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 SMPD4Q9NXE4 827 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 KIAA1468Q9P260 1216 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 CFAP97Q9P2B7 532 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 TBC1D14Q9P2M4 693 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 CTNND2Q9UQB3 1225 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 WDR87Q6ZQQ6 2873 aa12.21□□□□□ -0.45
RTN3-209ENST00000538995 ZNF292O60281 2723 aa12.21□□□□□ -0.46
RTN3-209ENST00000538995 OTOGLQ3ZCN5 2332 aa12.21□□□□□ -0.46
RTN3-209ENST00000538995 CFAP54Q96N23 3096 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 CHURC1-FNTBB4DL54 471 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 BIN1O00499 593 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 TLR5O60602 858 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 ATG13O75143 517 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 FGFR1OPO95684 399 aaKnown RBP12.2□□□□□ -0.46
RTN3-209ENST00000538995 ADH1CP00326 375 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 EIF2DP41214 584 aaKnown RBP12.2□□□□□ -0.46
RTN3-209ENST00000538995 PSEN1P49768 467 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 KIF11P52732 1056 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 SLC8A3P57103 927 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms