RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 VIMP08670 466 aaKnown RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 GSTA2P09210 222 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 ZNF865P0CJ78 1059 aaPredicted RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 AKR1A1P14550 325 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 WARSP23381 471 aaKnown RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 LRPAP1P30533 357 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 HOXC8P31273 242 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 STX2P32856 288 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 NR2C2P49116 596 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 RPL34P49207 117 aaKnown RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 AIF1P55008 147 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 BCAR1P56945 870 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 IFI35P80217 286 aaPredicted RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 PDIA2Q13087 525 aaKnown RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 XRCC4Q13426 336 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 DPYSL3Q14195 570 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 TMED2Q15363 201 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 DPYSL2Q16555 572 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 CCDC142Q17RM4 750 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 CCDC38Q502W7 563 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 ZC3H12AQ5D1E8 599 aaKnown RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 EFHC2Q5JST6 749 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 KCNT1Q5JUK3 1230 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 PPP1R26Q5T8A7 1209 aaPredicted RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 RNF187Q5TA31 235 aaPredicted RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 SLC9A4Q6AI14 798 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 SCARA3Q6AZY7 606 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 CYP4F22Q6NT55 531 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 DARS2Q6PI48 645 aaKnown RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 C6orf89Q6UWU4 347 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 ACOT1Q86TX2 421 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 TTC30AQ86WT1 665 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 C10orf67Q8IYJ2 551 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 ZBED8Q8IZ13 594 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 ARFGAP1Q8N6T3 406 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 C7orf31Q8N865 590 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 GBP7Q8N8V2 638 aaPredicted RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 NAT8LQ8N9F0 302 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 UBA3Q8TBC4 463 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 PYROXD1Q8WU10 500 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 FAM172AQ8WUF8 416 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 DNAJB3Q8WWF6 145 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 CKAP2Q8WWK9 683 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 CPT1BQ92523 772 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 KAT2BQ92831 832 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 APBB2Q92870 758 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 ALKBH8Q96BT7 664 aaKnown RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 ACSF2Q96CM8 615 aaPredicted RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 FAF2Q96CS3 445 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 LRRC39Q96DD0 335 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 RTP4Q96DX8 246 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 MAGEB18Q96M61 343 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 ZNF317Q96PQ6 595 aaPredicted RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 RNF157Q96PX1 679 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 SMC6Q96SB8 1091 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 FAM118BQ9BPY3 351 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 MRPL45Q9BRJ2 306 aaKnown RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 EIF2AQ9BY44 585 aaKnown RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 KLC2Q9H0B6 622 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 KDM4CQ9H3R0 1056 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 NXF3Q9H4D5 531 aaKnown RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 YY1AP1Q9H869 796 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 VPS37BQ9H9H4 285 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 KCNK9Q9NPC2 374 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 NGRNQ9NPE2 291 aaKnown RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 EURLQ9NYK6 297 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 TJP2Q9UDY2 1190 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 TUBGCP4Q9UGJ1 667 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 PCSK1NQ9UHG2 260 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 DDX20Q9UHI6 824 aaKnown RBP6.92□□□□□ -1.3
USP28-206ENST00000538224 GINS2Q9Y248 185 aa6.92□□□□□ -1.3
USP28-206ENST00000538224 SF3B1O75533 1304 aaKnown RBP eCLIP6.92□□□□□ -1.3
USP28-206ENST00000538224 DOCK3Q8IZD9 2030 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 SMIM28A0A1B0GU29 152 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 ARHGEF37A1IGU5 675 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 H0YHG0 523 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 H7C0C1 242 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 DUSP11O75319 330 aaKnown RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 DAB1O75553 588 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 STK10O94804 968 aaKnown RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 SUN1O94901 812 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 FBXO21O94952 628 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 ZWINTO95229 277 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 KRT15P19012 456 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 RPL22P35268 128 aaKnown RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 GNL1P36915 607 aaPredicted RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 ATP5OP48047 213 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 RGS7P49802 495 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 ZNF135P52742 658 aaPredicted RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 HUNKP57058 714 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 GEMIN4P57678 1058 aaKnown RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 BASP1P80723 227 aaKnown RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 SARNPP82979 210 aaKnown RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 TMEM62Q0P6H9 643 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 SREBF2Q12772 1141 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 IFT88Q13099 833 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 SPARCL1Q14515 664 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 FSCN1Q16658 493 aaKnown RBP6.91□□□□□ -1.3
USP28-206ENST00000538224 CDO1Q16878 200 aa6.91□□□□□ -1.3
USP28-206ENST00000538224 SOWAHAQ2M3V2 549 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms