RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 HSD17B14Q9BPX1 270 aa6.97□□□□□ -1.29
CD44-237ENST00000534082 LSG1Q9H089 658 aaKnown RBP6.97□□□□□ -1.29
CD44-237ENST00000534082 ZCWPW1Q9H0M4 648 aa6.97□□□□□ -1.29
CD44-237ENST00000534082 ABI2Q9NYB9 513 aaPredicted RBP6.97□□□□□ -1.29
CD44-237ENST00000534082 FTSJ1Q9UET6 329 aa6.97□□□□□ -1.29
CD44-237ENST00000534082 PAXBP1Q9Y5B6 917 aa6.97□□□□□ -1.29
CD44-237ENST00000534082 DENND4CQ5VZ89 1909 aa6.97□□□□□ -1.29
CD44-237ENST00000534082 PHLPP2Q6ZVD8 1323 aa6.97□□□□□ -1.29
CD44-237ENST00000534082 STK36Q9NRP7 1315 aa6.97□□□□□ -1.29
CD44-237ENST00000534082 CREBBPQ92793 2442 aa6.97□□□□□ -1.29
CD44-237ENST00000534082 KNTC1P50748 2209 aa6.96□□□□□ -1.29
CD44-237ENST00000534082 USP9YO00507 2555 aaPredicted RBP6.96□□□□□ -1.29
CD44-237ENST00000534082 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.96□□□□□ -1.3
CD44-237ENST00000534082 BTBD18B2RXH4 712 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 BCAT2O15382 392 aaPredicted RBP6.96□□□□□ -1.3
CD44-237ENST00000534082 CSH1P0DML2 217 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 CSH2P0DML3 217 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 MCF2P10911 925 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 NCAM1P13591 858 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 TCF3P15923 654 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 TNFSF9P41273 254 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 GRIA2P42262 883 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 WASP42768 502 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 TNFRSF4P43489 277 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 GPR15P49685 360 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 NFATC3Q12968 1075 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 NR5A1Q13285 461 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 KCNB1Q14721 858 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 NECTIN1Q15223 517 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 DHCR24Q15392 516 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 SF3A1Q15459 793 aaKnown RBP6.96□□□□□ -1.3
CD44-237ENST00000534082 NPY5RQ15761 445 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 NTRK3Q16288 839 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 INAVAQ3KP66 663 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 LCE2AQ5TA79 106 aaPredicted RBP6.96□□□□□ -1.3
CD44-237ENST00000534082 HES3Q5TGS1 186 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 USP49Q70CQ1 688 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 NEK8Q86SG6 692 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 SLFN12Q8IYM2 578 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 ARL14EPQ8N8R7 260 aaPredicted RBP6.96□□□□□ -1.3
CD44-237ENST00000534082 ZNF248Q8NDW4 579 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 C2orf15Q8WU43 125 aaKnown RBP6.96□□□□□ -1.3
CD44-237ENST00000534082 ITPKCQ96DU7 683 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 ERLEC1Q96DZ1 483 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 ACO2Q99798 780 aaKnown RBP6.96□□□□□ -1.3
CD44-237ENST00000534082 SLC6A17Q9H1V8 727 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 TTC12Q9H892 705 aaPredicted RBP6.96□□□□□ -1.3
CD44-237ENST00000534082 PTPRHQ9HD43 1115 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 GCNT4Q9P109 453 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 UXTQ9UBK9 157 aaPredicted RBP6.96□□□□□ -1.3
CD44-237ENST00000534082 ARHGAP26Q9UNA1 814 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 NFE2L3Q9Y4A8 694 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 PCDHGA1Q9Y5H4 931 aa6.96□□□□□ -1.3
CD44-237ENST00000534082 CITO14578 2027 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 CABIN1Q9Y6J0 2220 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 A0A0A0MRY4 1105 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 A0A1B0GVT2 93 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 C2orf78A6NCI8 922 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 K7ERI5 159 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 ABLIM1O14639 778 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 SCAMP3O14828 347 aaKnown RBP6.95□□□□□ -1.3
CD44-237ENST00000534082 PPEF2O14830 753 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 RFPL3O75679 317 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 NOL4O94818 638 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 BAG4O95429 457 aaKnown RBP6.95□□□□□ -1.3
CD44-237ENST00000534082 ADH5P11766 374 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 XRCC6P12956 609 aaKnown RBP eCLIP6.95□□□□□ -1.3
CD44-237ENST00000534082 IFNAR1P17181 557 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 CD6P30203 668 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 NTSR1P30989 418 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 CCT8P50990 548 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 GUCY2FP51841 1108 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 PCBP4P57723 403 aaKnown RBP6.95□□□□□ -1.3
CD44-237ENST00000534082 SPAG1Q07617 926 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 NR6A1Q15406 480 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 SLC10A6Q3KNW5 377 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 SEZ6Q53EL9 994 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 C4orf17Q53FE4 359 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 SDHAF4Q5VUM1 108 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 MPZL3Q6UWV2 235 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 KIAA1324Q6UXG2 1013 aaKnown RBP6.95□□□□□ -1.3
CD44-237ENST00000534082 FILIP1Q7Z7B0 1213 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 MIB1Q86YT6 1006 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 PHTF2Q8N3S3 785 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 IPO4Q8TEX9 1081 aaKnown RBP6.95□□□□□ -1.3
CD44-237ENST00000534082 TRMT2BQ96GJ1 504 aaKnown RBP6.95□□□□□ -1.3
CD44-237ENST00000534082 TOE1Q96GM8 510 aaKnown RBP6.95□□□□□ -1.3
CD44-237ENST00000534082 IFT74Q96LB3 600 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 SENP8Q96LD8 212 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 DRC1Q96MC2 740 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 NAP1L4Q99733 375 aaKnown RBP6.95□□□□□ -1.3
CD44-237ENST00000534082 TCHPQ9BT92 498 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 MRPL4Q9BYD3 311 aaKnown RBP6.95□□□□□ -1.3
CD44-237ENST00000534082 CD248Q9HCU0 757 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 SRPK3Q9UPE1 567 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 AHCTF1Q8WYP5 2266 aa6.95□□□□□ -1.3
CD44-237ENST00000534082 TBC1D3BA6NDS4 549 aa6.94□□□□□ -1.3
CD44-237ENST00000534082 CBX4O00257 560 aa6.94□□□□□ -1.3
CD44-237ENST00000534082 LEFTY2O00292 366 aa6.94□□□□□ -1.3
CD44-237ENST00000534082 ENC1O14682 589 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms