RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 BACE2Q9Y5Z0 518 aa22.04■■□□□ 1.12
VPS28-208ENST00000527797 LRCH4O75427 683 aa22.03■■□□□ 1.12
VPS28-208ENST00000527797 ZBED1O96006 694 aa22.03■■□□□ 1.12
VPS28-208ENST00000527797 PYGMP11217 842 aa22.03■■□□□ 1.12
VPS28-208ENST00000527797 GJC1P36383 396 aa22.03■■□□□ 1.12
VPS28-208ENST00000527797 MAGEA11P43364 429 aa22.03■■□□□ 1.12
VPS28-208ENST00000527797 YWHAZP63104 245 aaKnown RBP22.03■■□□□ 1.12
VPS28-208ENST00000527797 PSMD5Q16401 504 aa22.03■■□□□ 1.12
VPS28-208ENST00000527797 RSPO2Q6UXX9 243 aaPredicted RBP22.03■■□□□ 1.12
VPS28-208ENST00000527797 RSRC2Q7L4I2 434 aaKnown RBP22.03■■□□□ 1.12
VPS28-208ENST00000527797 DDX53Q86TM3 631 aaKnown RBP22.03■■□□□ 1.12
VPS28-208ENST00000527797 SCN4BQ8IWT1 228 aa22.03■■□□□ 1.12
VPS28-208ENST00000527797 KATNAL2Q8IYT4 538 aa22.03■■□□□ 1.12
VPS28-208ENST00000527797 ARFGAP1Q8N6T3 406 aa22.03■■□□□ 1.12
VPS28-208ENST00000527797 NDRG1Q92597 394 aaKnown RBP22.03■■□□□ 1.12
VPS28-208ENST00000527797 CFAP57Q96MR6 1250 aa22.03■■□□□ 1.12
VPS28-208ENST00000527797 PGLYRP2Q96PD5 576 aa22.03■■□□□ 1.12
VPS28-208ENST00000527797 MTIF3Q9H2K0 278 aaKnown RBP22.03■■□□□ 1.12
VPS28-208ENST00000527797 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP22.03■■□□□ 1.12
VPS28-208ENST00000527797 MTRRQ9UBK8 725 aa22.03■■□□□ 1.12
VPS28-208ENST00000527797 TRIM66O15016 1216 aa22.02■■□□□ 1.12
VPS28-208ENST00000527797 FGGP02679 453 aa22.02■■□□□ 1.12
VPS28-208ENST00000527797 PCK1P35558 622 aa22.02■■□□□ 1.12
VPS28-208ENST00000527797 PTPN9P43378 593 aa22.02■■□□□ 1.12
VPS28-208ENST00000527797 GLUD2P49448 558 aa22.02■■□□□ 1.12
VPS28-208ENST00000527797 DAOAP59103 153 aa22.02■■□□□ 1.12
VPS28-208ENST00000527797 LONRF2Q1L5Z9 754 aa22.02■■□□□ 1.12
VPS28-208ENST00000527797 TEX35Q5T0J7 233 aa22.02■■□□□ 1.12
VPS28-208ENST00000527797 HERC6Q8IVU3 1022 aa22.02■■□□□ 1.12
VPS28-208ENST00000527797 SCML4Q8N228 414 aa22.02■■□□□ 1.12
VPS28-208ENST00000527797 FBXO22Q8NEZ5 403 aa22.02■■□□□ 1.12
VPS28-208ENST00000527797 SPPL2BQ8TCT7 592 aa22.02■■□□□ 1.12
VPS28-208ENST00000527797 C2orf15Q8WU43 125 aaKnown RBP22.02■■□□□ 1.12
VPS28-208ENST00000527797 C8orf48Q96LL4 319 aa22.02■■□□□ 1.12
VPS28-208ENST00000527797 NCAPGQ9BPX3 1015 aa22.02■■□□□ 1.12
VPS28-208ENST00000527797 DDX23Q9BUQ8 820 aaKnown RBP22.02■■□□□ 1.12
VPS28-208ENST00000527797 NOL12Q9UGY1 213 aaKnown RBP eCLIP22.02■■□□□ 1.12
VPS28-208ENST00000527797 CDY1Q9Y6F8 540 aa22.02■■□□□ 1.12
VPS28-208ENST00000527797 V9GYY5 206 aaPredicted RBP22.02■■□□□ 1.12
VPS28-208ENST00000527797 DAB1O75553 588 aa22.02■■□□□ 1.11
VPS28-208ENST00000527797 USP17L7P0C7H9 530 aa22.02■■□□□ 1.11
VPS28-208ENST00000527797 TCF4P15884 667 aa22.02■■□□□ 1.11
VPS28-208ENST00000527797 C2orf54Q08AI8 447 aa22.02■■□□□ 1.11
VPS28-208ENST00000527797 C15orf59Q2T9L4 293 aaPredicted RBP22.02■■□□□ 1.11
VPS28-208ENST00000527797 ZFYVE27Q5T4F4 411 aa22.02■■□□□ 1.11
VPS28-208ENST00000527797 SLC8B1Q6J4K2 584 aa22.02■■□□□ 1.11
VPS28-208ENST00000527797 POLNQ7Z5Q5 900 aa22.02■■□□□ 1.11
VPS28-208ENST00000527797 ATAD1Q8NBU5 361 aa22.02■■□□□ 1.11
VPS28-208ENST00000527797 IRGQQ8WZA9 623 aa22.02■■□□□ 1.11
VPS28-208ENST00000527797 RAD9AQ99638 391 aa22.02■■□□□ 1.11
VPS28-208ENST00000527797 DDX56Q9NY93 547 aaKnown RBP22.02■■□□□ 1.11
VPS28-208ENST00000527797 MTMR11A4FU01 709 aa22.01■■□□□ 1.11
VPS28-208ENST00000527797 ZRANB2O95218 330 aaKnown RBP eCLIP22.01■■□□□ 1.112e-7■■□□□ 13.6
VPS28-208ENST00000527797 KRT7P08729 469 aa22.01■■□□□ 1.11
VPS28-208ENST00000527797 ATP2A2P16615 1042 aaKnown RBP22.01■■□□□ 1.11
VPS28-208ENST00000527797 MIPP30301 263 aa22.01■■□□□ 1.11
VPS28-208ENST00000527797 MATKP42679 507 aa22.01■■□□□ 1.11
VPS28-208ENST00000527797 ATP11AP98196 1134 aa22.01■■□□□ 1.11
VPS28-208ENST00000527797 DSG1Q02413 1049 aa22.01■■□□□ 1.11
VPS28-208ENST00000527797 ERCC6LQ2NKX8 1250 aa22.01■■□□□ 1.11
VPS28-208ENST00000527797 PM20D1Q6GTS8 502 aa22.01■■□□□ 1.11
VPS28-208ENST00000527797 AADACL2Q6P093 401 aa22.01■■□□□ 1.11
VPS28-208ENST00000527797 RNF19BQ6ZMZ0 732 aa22.01■■□□□ 1.11
VPS28-208ENST00000527797 RCOR2Q8IZ40 523 aa22.01■■□□□ 1.11
VPS28-208ENST00000527797 DEFB106AQ8N104 65 aa22.01■■□□□ 1.11
VPS28-208ENST00000527797 EXD1Q8NHP7 514 aa22.01■■□□□ 1.11
VPS28-208ENST00000527797 POPDC2Q9HBU9 364 aa22.01■■□□□ 1.11
VPS28-208ENST00000527797 STK39Q9UEW8 545 aa22.01■■□□□ 1.11
VPS28-208ENST00000527797 USP3Q9Y6I4 520 aa22.01■■□□□ 1.11
VPS28-208ENST00000527797 VWA8A3KMH1 1905 aa22■■□□□ 1.11
VPS28-208ENST00000527797 C2CD2LO14523 706 aa22■■□□□ 1.11
VPS28-208ENST00000527797 SLC25A11Q02978 314 aaKnown RBP22■■□□□ 1.11
VPS28-208ENST00000527797 KRT17Q04695 432 aa22■■□□□ 1.11
VPS28-208ENST00000527797 CDO1Q16878 200 aa22■■□□□ 1.11
VPS28-208ENST00000527797 ODF2Q5BJF6 829 aa22■■□□□ 1.11
VPS28-208ENST00000527797 SH3PXD2AQ5TCZ1 1133 aa22■■□□□ 1.11
VPS28-208ENST00000527797 FAM172AQ8WUF8 416 aa22■■□□□ 1.11
VPS28-208ENST00000527797 SLC2A13Q96QE2 648 aa22■■□□□ 1.11
VPS28-208ENST00000527797 ZWILCHQ9H900 591 aa22■■□□□ 1.11
VPS28-208ENST00000527797 USP18Q9UMW8 372 aa22■■□□□ 1.11
VPS28-208ENST00000527797 KRIT1O00522 736 aa21.99■■□□□ 1.11
VPS28-208ENST00000527797 TNFRSF10BO14763 440 aa21.99■■□□□ 1.11
VPS28-208ENST00000527797 TRUB2O95900 331 aaKnown RBP21.99■■□□□ 1.11
VPS28-208ENST00000527797 KRT1P04264 644 aa21.99■■□□□ 1.11
VPS28-208ENST00000527797 NOS2P35228 1153 aa21.99■■□□□ 1.11
VPS28-208ENST00000527797 CETN2P41208 172 aa21.99■■□□□ 1.11
VPS28-208ENST00000527797 SLC5A3P53794 718 aa21.99■■□□□ 1.11
VPS28-208ENST00000527797 SMC1AQ14683 1233 aaKnown RBP21.99■■□□□ 1.11
VPS28-208ENST00000527797 NAA30Q147X3 362 aaPredicted RBP21.99■■□□□ 1.11
VPS28-208ENST00000527797 ATP13A4Q4VNC1 1196 aa21.99■■□□□ 1.11
VPS28-208ENST00000527797 CCDC50Q8IVM0 306 aa21.99■■□□□ 1.11
VPS28-208ENST00000527797 MMGT1Q8N4V1 131 aa21.99■■□□□ 1.11
VPS28-208ENST00000527797 NOA1Q8NC60 698 aaKnown RBP21.99■■□□□ 1.11
VPS28-208ENST00000527797 RBM41Q96IZ5 413 aaKnown RBP21.99■■□□□ 1.11
VPS28-208ENST00000527797 NGRNQ9NPE2 291 aaKnown RBP21.99■■□□□ 1.11
VPS28-208ENST00000527797 PCSK1NQ9UHG2 260 aa21.99■■□□□ 1.11
VPS28-208ENST00000527797 STAP1Q9ULZ2 295 aa21.99■■□□□ 1.11
VPS28-208ENST00000527797 YJEFN3A6XGL0 299 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 E7ENQ6 273 aa21.98■■□□□ 1.11
VPS28-208ENST00000527797 CAPN9O14815 690 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms