RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 PEAR1Q5VY43 1037 aaPredicted RBP11.68□□□□□ -0.54
NEDD8-204ENST00000526430 CEP135Q66GS9 1140 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 SASS6Q6UVJ0 657 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 ZNF605Q86T29 641 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 SYT12Q8IV01 421 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 DHX40Q8IX18 779 aaKnown RBP11.68□□□□□ -0.54
NEDD8-204ENST00000526430 SCUBE3Q8IX30 993 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 HDDC3Q8N4P3 179 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 C1orf127Q8N9H9 656 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 BEST2Q8NFU1 509 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 RPLP0P6Q8NHW5 317 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 MDM1Q8TC05 714 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 EXOC4Q96A65 974 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 CEP63Q96MT8 703 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 TSPAN18Q96SJ8 248 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 FAM83CQ9BQN1 747 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 SAMSN1Q9NSI8 373 aaKnown RBP11.68□□□□□ -0.54
NEDD8-204ENST00000526430 ANO10Q9NW15 660 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 YIPF1Q9Y548 306 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 KNTC1P50748 2209 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 ANAPC1Q9H1A4 1944 aa11.68□□□□□ -0.54
NEDD8-204ENST00000526430 CETN3O15182 167 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 LETM1O95202 739 aaPredicted RBP11.67□□□□□ -0.54
NEDD8-204ENST00000526430 VNN1O95497 513 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 RPL13P26373 211 aaKnown RBP11.67□□□□□ -0.54
NEDD8-204ENST00000526430 ENPEPQ07075 957 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 STIM1Q13586 685 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 RUNX3Q13761 415 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 STX1AQ16623 288 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 ANO6Q4KMQ2 910 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 ZNF280DQ6N043 979 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 GAREM2Q75VX8 874 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 TRIM59Q8IWR1 403 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 FAM186BQ8IYM0 893 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 CSGALNACT2Q8N6G5 542 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 TSTD1Q8NFU3 115 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 SLC35C1Q96A29 364 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 SYAP1Q96A49 352 aaPredicted RBP11.67□□□□□ -0.54
NEDD8-204ENST00000526430 CCDC127Q96BQ5 260 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 CNOT6LQ96LI5 555 aaKnown RBP11.67□□□□□ -0.54
NEDD8-204ENST00000526430 CGRRF1Q99675 332 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 HPS4Q9NQG7 708 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 DPP3Q9NY33 737 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 UBQLN1Q9UMX0 589 aaKnown RBP11.67□□□□□ -0.54
NEDD8-204ENST00000526430 ATMQ13315 3056 aa11.67□□□□□ -0.54
NEDD8-204ENST00000526430 PIEZO2Q9H5I5 2752 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 BICDL2A1A5D9 508 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 IKBKBO14920 756 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 SLC16A3O15427 465 aaKnown RBP11.66□□□□□ -0.54
NEDD8-204ENST00000526430 OPHN1O60890 802 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 TRIM49P0CI25 452 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 TRIM49CP0CI26 452 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 CD59P13987 128 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 AARSP49588 968 aaKnown RBP eCLIP11.66□□□□□ -0.54
NEDD8-204ENST00000526430 VAMP7P51809 220 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 EPHB3P54753 998 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 BFSP1Q12934 665 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 TMEM132DQ14C87 1099 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 CTXN3Q4LDR2 81 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 ARHGAP15Q53QZ3 475 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 CDKAL1Q5VV42 579 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 TDRD10Q5VZ19 366 aaKnown RBP11.66□□□□□ -0.54
NEDD8-204ENST00000526430 C9orf57Q5W0N0 161 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 RNF19BQ6ZMZ0 732 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 LPCAT2Q7L5N7 544 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 APTXQ7Z2E3 356 aaKnown RBP11.66□□□□□ -0.54
NEDD8-204ENST00000526430 TRAPPC11Q7Z392 1133 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 NT5DC4Q86YG4 428 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 GPIHBP1Q8IV16 184 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 WDR49Q8IV35 697 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 CCDC26Q8TAB7 109 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 OLIG1Q8TAK6 271 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 NOC3LQ8WTT2 800 aaKnown RBP11.66□□□□□ -0.54
NEDD8-204ENST00000526430 ELMO3Q96BJ8 720 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 TSG101Q99816 390 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 P2RY13Q9BPV8 354 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 TPSD1Q9BZJ3 242 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 FBRSL1Q9HCM7 1045 aaKnown RBP11.66□□□□□ -0.54
NEDD8-204ENST00000526430 GKN1Q9NS71 199 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 TMEM74BQ9NUR3 256 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 FANCLQ9NW38 375 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 MBD1Q9UIS9 605 aaPredicted RBP11.66□□□□□ -0.54
NEDD8-204ENST00000526430 ZMYM5Q9UJ78 669 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 INVSQ9Y283 1065 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 ASB3Q9Y575 518 aa11.66□□□□□ -0.54
NEDD8-204ENST00000526430 OTOL1A6NHN0 477 aaPredicted RBP11.65□□□□□ -0.54
NEDD8-204ENST00000526430 FTH1P19P0C7X4 201 aa11.65□□□□□ -0.54
NEDD8-204ENST00000526430 DLATP10515 647 aaKnown RBP11.65□□□□□ -0.54
NEDD8-204ENST00000526430 CPB1P15086 417 aa11.65□□□□□ -0.54
NEDD8-204ENST00000526430 ZNF18P17022 549 aa11.65□□□□□ -0.54
NEDD8-204ENST00000526430 RPL9P32969 192 aaKnown RBP11.65□□□□□ -0.54
NEDD8-204ENST00000526430 GALK1P51570 392 aa11.65□□□□□ -0.54
NEDD8-204ENST00000526430 TFAMQ00059 246 aaKnown RBP11.65□□□□□ -0.54
NEDD8-204ENST00000526430 SLC14A1Q13336 389 aa11.65□□□□□ -0.54
NEDD8-204ENST00000526430 SURF1Q15526 300 aa11.65□□□□□ -0.54
NEDD8-204ENST00000526430 TRIP6Q15654 476 aaKnown RBP11.65□□□□□ -0.54
NEDD8-204ENST00000526430 ZACNQ401N2 412 aa11.65□□□□□ -0.54
NEDD8-204ENST00000526430 CBWD6Q4V339 395 aa11.65□□□□□ -0.54
NEDD8-204ENST00000526430 CBWD3Q5JTY5 395 aa11.65□□□□□ -0.54
NEDD8-204ENST00000526430 CBWD5Q5RIA9 395 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms