RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ITGA5P08648 1049 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 GNAI3P08754 354 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CD63P08962 238 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 QDPRP09417 244 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 LTA4HP09960 611 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 FTH1P19P0C7X4 201 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TSPY3P0CV98 308 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TSPY8P0CW00 308 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 THEGLP0DJG4 465 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SRGAP2BP0DMP2 458 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSPA1AP0DMV8 641 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSPA1BP0DMV9 641 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MYBP10242 640 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 NR2F1P10589 423 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 RARBP10826 455 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACADMP11310 421 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MTHFD1P11586 935 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CKMT1AP12532 417 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 XRCC6P12956 609 aaKnown RBP eCLIP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATP1A3P13637 1013 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 P4HA1P13674 534 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 OSMP13725 252 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 LCP1P13796 627 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 HNRNPLP14866 589 aaKnown RBP eCLIP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 AKR1B1P15121 316 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 VEGFAP15692 232 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNA2P16389 499 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TSHRP16473 764 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 HK1P19367 917 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 WT1P19544 449 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC9A1P19634 815 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 IL11P20809 199 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 FGFR2P21802 821 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MUTP22033 750 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 KELP23276 732 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SP100P23497 879 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATP5F1P24539 256 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBXAS1P24557 533 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MT3P25713 68 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTX3P26022 381 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CNTFP26441 200 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CST5P28325 142 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 EEF1DP29692 281 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATP5DP30049 168 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ECHS1P30084 290 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC7A1P30825 629 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 HOXD13P35453 343 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT2P35908 639 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TCF7P36402 384 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 FOLR3P41439 243 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 LIFRP42702 1097 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ABCG1P45844 678 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 POLD2P49005 469 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 AARSP49588 968 aaKnown RBP eCLIP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MCM2P49736 904 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TUBP50607 506 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PDE6CP51160 858 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF81P51508 661 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 HK3P52790 923 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 COPAP53621 1224 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SEC24CP53992 1094 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CSE1LP55060 971 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MANFP55145 182 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TPD52P55327 224 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SUMO3P55854 103 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 JAM2P57087 298 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 EVCP57679 992 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CLRN1P58418 232 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 BPIFB3P59826 476 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 RNASE9P60153 205 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRTAP10-2P60368 255 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRTAP10-9P60411 292 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPS7P62081 194 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 RAB1AP62820 205 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 GNAI1P63096 354 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 IL13RA1P78552 427 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 HOXA4Q00056 320 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SRSF2Q01130 221 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TSPY1Q01534 308 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 DSC2Q02487 901 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 UBE3AQ05086 875 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 FPGSQ05932 587 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CHRNDQ07001 517 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 KHDRBS1Q07666 443 aaKnown RBP eCLIP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CYP4F3Q08477 520 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 GALNT1Q10472 559 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TFCP2Q12800 502 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 EPS8Q12929 822 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 BFSP1Q12934 665 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MALLQ13021 153 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPP2R5CQ13362 524 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MRPL49Q13405 166 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADAM15Q13444 863 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SNAPC2Q13487 334 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MAMLD1Q13495 774 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRPF4BQ13523 1007 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACVR2BQ13705 512 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TOB2Q14106 344 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SCARB2Q14108 478 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT32Q14532 448 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms