RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 QPCTLQ9NXS2 382 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 STK17AQ9UEE5 414 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 AGO2Q9UKV8 859 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 TAF4O00268 1085 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 MARCH6O60337 910 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 EIF2S1P05198 315 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 MCF2P10911 925 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 GRIK5Q16478 980 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 TTC23LQ6PF05 361 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 CCDC89Q8N998 374 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 GJA10Q969M2 543 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 TMEM79Q9BSE2 394 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 UNKQ9C0B0 810 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 C6orf203Q9P0P8 240 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 PARP4Q9UKK3 1724 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 SEC24DO94855 1032 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 ABHD2P08910 425 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 GJC1P36383 396 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 DNASE1L3Q13609 305 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 MOGQ16653 247 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 CYP4V2Q6ZWL3 525 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 IGFN1Q86VF2 1251 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 TDRPQ86YL5 185 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 PPP1R14CQ8TAE6 165 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 FAM89AQ96GI7 184 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 HERPUD2Q9BSE4 406 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 NAA50Q9GZZ1 169 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 C1orf21Q9H246 121 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 NOL6Q9H6R4 1146 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 PCDHGA11Q9Y5H2 935 aa12.5□□□□□ -0.41
LIMCH1-213ENST00000511496 AP3B1O00203 1094 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 TM9SF1O15321 606 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 AKAP3O75969 853 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 MX2P20592 715 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 BST1Q10588 318 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 TFDP1Q14186 410 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 C11orf63Q6NUN7 778 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 TMEM26Q6ZUK4 368 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 RNF148Q8N7C7 305 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 SGF29Q96ES7 293 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 APOL6Q9BWW8 343 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 SEMA6AQ9H2E6 1030 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 CPVLQ9H3G5 476 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 CXorf21Q9HAI6 301 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 VPS45Q9NRW7 570 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 LRP2BPQ9P2M1 347 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 DNAJC16Q9Y2G8 782 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 SF3B1O75533 1304 aaKnown RBP eCLIP12.49□□□□□ -0.411e-8■■■■■ 160.4
LIMCH1-213ENST00000511496 CCDC88AQ3V6T2 1871 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 DDAH1O94760 285 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 MARSP56192 900 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 SLC15A2Q16348 729 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 USP41Q3LFD5 358 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 UBE2UQ5VVX9 321 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 LRRC49Q8IUZ0 686 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 MYO1HQ8N1T3 1032 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 BANPQ8N9N5 519 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 ZNF280CQ8ND82 737 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 DNAJC19Q96DA6 116 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 OLFM1Q99784 485 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 SENP7Q9BQF6 1050 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 PLEKHA5Q9HAU0 1116 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 PADI4Q9UM07 663 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 SQORQ9Y6N5 450 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 CDK2AP1O14519 115 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 ABCB1P08183 1280 aaPredicted RBP12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 SNRPA1P09661 255 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 CCNG2Q16589 344 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 SMU1Q2TAY7 513 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 CEP78Q5JTW2 689 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 LRP10Q7Z4F1 713 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 UBE2Q1Q7Z7E8 422 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 TRPC4APQ8TEL6 797 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 PAFAH2Q99487 392 aa12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 RPF2Q9H7B2 306 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-213ENST00000511496 GRK2P25098 689 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 KCNC4Q03721 635 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 EVX2Q03828 476 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 CALCRLQ16602 461 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 FAM91A1Q658Y4 838 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 TRIM72Q6ZMU5 477 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 RALGPS2Q86X27 583 aaPredicted RBP12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 DTX3Q8N9I9 347 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 TBCKQ8TEA7 893 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 KCTD10Q9H3F6 313 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 CTDP1Q9Y5B0 961 aaPredicted RBP12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 CPQQ9Y646 472 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 TMEM131LA2VDJ0 1609 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 ZNF536O15090 1300 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 NWD1Q149M9 1564 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 E9PMD0 336 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 H3BMQ9 156 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 FSCN2O14926 492 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 ETS1P14921 441 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 NCF2P19878 526 aaPredicted RBP12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 FGFR3P22607 806 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 MAP4P27816 1152 aaKnown RBP12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 TFAP4Q01664 338 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 ADGRE1Q14246 886 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms