RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 DNAI1Q9UI46 699 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 GTF3C4Q9UKN8 822 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 FBXO4Q9UKT5 387 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 CDH9Q9ULB4 789 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 MTF2Q9Y483 593 aaPredicted RBP8.55□□□□□ -1.04
SCN1A-207ENST00000507401 PTPRJQ12913 1337 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 MYBPHLA2RUH7 354 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 SHISA7A6NL88 538 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 A6NNZ2 444 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 VGLL3A8MV65 326 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 MYO1CO00159 1063 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 IKBKBO14920 756 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 ZSCAN12O43309 604 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 SOAT2O75908 522 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 NOL4O94818 638 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 CPP00450 1065 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 RPN1P04843 607 aaKnown RBP8.54□□□□□ -1.04
SCN1A-207ENST00000507401 DLATP10515 647 aaKnown RBP8.54□□□□□ -1.04
SCN1A-207ENST00000507401 CYP2F1P24903 491 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 LMO2P25791 158 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 ACTN2P35609 894 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 GNL1P36915 607 aaPredicted RBP8.54□□□□□ -1.04
SCN1A-207ENST00000507401 CYP2J2P51589 502 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 NLRP12P59046 1061 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 GRM2Q14416 872 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 UBXN2BQ14CS0 331 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 BRD3Q15059 726 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 TUBB8Q3ZCM7 444 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 TTC31Q49AM3 519 aaPredicted RBP8.54□□□□□ -1.04
SCN1A-207ENST00000507401 LMBRD2Q68DH5 695 aaPredicted RBP8.54□□□□□ -1.04
SCN1A-207ENST00000507401 TREML4Q6UXN2 200 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 TPRG1Q6ZUI0 275 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 SRLQ86TD4 932 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 TMEM150AQ86TG1 271 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 MON1AQ86VX9 555 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 OSTM1Q86WC4 334 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 SPATA2LQ8IUW3 424 aaPredicted RBP8.54□□□□□ -1.04
SCN1A-207ENST00000507401 YAF2Q8IY57 180 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 ADGRF2Q8IZF7 708 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 CMTM8Q8IZV2 173 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 C17orf53Q8N3J3 647 aaPredicted RBP8.54□□□□□ -1.04
SCN1A-207ENST00000507401 CELF5Q8N6W0 485 aaKnown RBP8.54□□□□□ -1.04
SCN1A-207ENST00000507401 MYCBPAPQ8TBZ2 947 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 CSGALNACT1Q8TDX6 532 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 EPS8L1Q8TE68 723 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 PARD3BQ8TEW8 1205 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 GIPC2Q8TF65 315 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 HNRNPLLQ8WVV9 542 aaKnown RBP8.54□□□□□ -1.04
SCN1A-207ENST00000507401 KBTBD7Q8WVZ9 684 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 CCDC47Q96A33 483 aaKnown RBP8.54□□□□□ -1.04
SCN1A-207ENST00000507401 CCDC127Q96BQ5 260 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 CCDC34Q96HJ3 373 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 SPATA17Q96L03 361 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 LPIN3Q9BQK8 851 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 PI4K2AQ9BTU6 479 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 KCTD10Q9H3F6 313 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 C8orf33Q9H7E9 229 aaPredicted RBP8.54□□□□□ -1.04
SCN1A-207ENST00000507401 VRTNQ9H8Y1 702 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 ARFGAP3Q9NP61 516 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 EXOC1Q9NV70 894 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 THG1LQ9NWX6 298 aaKnown RBP8.54□□□□□ -1.04
SCN1A-207ENST00000507401 EHD2Q9NZN4 543 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 MAGEC2Q9UBF1 373 aaPredicted RBP8.54□□□□□ -1.04
SCN1A-207ENST00000507401 MAP4K5Q9Y4K4 846 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.54□□□□□ -1.04
SCN1A-207ENST00000507401 MIA3Q5JRA6 1907 aa8.54□□□□□ -1.04
SCN1A-207ENST00000507401 MYO15AQ9UKN7 3530 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 F5P12259 2224 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 CACNA1IQ9P0X4 2223 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 DENND4CQ5VZ89 1909 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 PRR23AA6NEV1 266 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 BECN2A8MW95 431 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 MAPK13O15264 365 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 RHOBTB3O94955 611 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 SP9P0CG40 484 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 PFKLP17858 780 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 CD72P21854 359 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 ACAT1P24752 427 aaKnown RBP8.53□□□□□ -1.04
SCN1A-207ENST00000507401 AVPR1AP37288 418 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 PPP3CCP48454 512 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 NDUFA8P51970 172 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 MCCD1P59942 119 aaPredicted RBP8.53□□□□□ -1.04
SCN1A-207ENST00000507401 ENPEPQ07075 957 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 TRPC3Q13507 836 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 ZNF268Q14587 947 aaPredicted RBP8.53□□□□□ -1.04
SCN1A-207ENST00000507401 KCNB1Q14721 858 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 AGERQ15109 404 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 ELF2Q15723 593 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 NFIL3Q16649 462 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 DDR2Q16832 855 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 WDR72Q3MJ13 1102 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 ANO6Q4KMQ2 910 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 STXBP5Q5T5C0 1151 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 ZC3H14Q6PJT7 736 aaKnown RBP8.53□□□□□ -1.04
SCN1A-207ENST00000507401 KRBA2Q6ZNG9 492 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 FRMD5Q7Z6J6 570 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 RALGPS2Q86X27 583 aaPredicted RBP8.53□□□□□ -1.04
SCN1A-207ENST00000507401 GRAMD1CQ8IYS0 662 aa8.53□□□□□ -1.04
SCN1A-207ENST00000507401 MAML2Q8IZL2 1156 aaPredicted RBP8.53□□□□□ -1.04
SCN1A-207ENST00000507401 KIAA0895Q8NCT3 520 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms