RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 NSUN2Q08J23 767 aaKnown RBP eCLIP14.65□□□□□ -0.06
TCOF1-207ENST00000504761 CRLF3Q8IUI8 442 aa14.65□□□□□ -0.06
TCOF1-207ENST00000504761 TMEM192Q8IY95 271 aa14.65□□□□□ -0.06
TCOF1-207ENST00000504761 CD99L2Q8TCZ2 262 aa14.65□□□□□ -0.06
TCOF1-207ENST00000504761 ZNF669Q96BR6 464 aaPredicted RBP14.65□□□□□ -0.06
TCOF1-207ENST00000504761 NTPCRQ9BSD7 190 aaKnown RBP14.65□□□□□ -0.06
TCOF1-207ENST00000504761 DCLK3Q9C098 648 aa14.65□□□□□ -0.06
TCOF1-207ENST00000504761 BAG2O95816 211 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 RAG1P15918 1043 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 HOXD13P35453 343 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 SLC6A3Q01959 620 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 BIRC2Q13490 618 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 MMEL1Q495T6 779 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 MROH9Q5TGP6 573 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 ATG16L1Q676U5 607 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 RAB44Q7Z6P3 723 aaPredicted RBP14.64□□□□□ -0.07
TCOF1-207ENST00000504761 TBC1D1Q86TI0 1168 aaPredicted RBP14.64□□□□□ -0.07
TCOF1-207ENST00000504761 PIGZQ86VD9 579 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 GANCQ8TET4 914 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 TTC1Q99614 292 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 TRIM55Q9BYV6 548 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 SLC8A2Q9UPR5 921 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 C2CD2Q9Y426 696 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 SLC12A8A0AV02 714 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 HSPA9P38646 679 aaKnown RBP14.64□□□□□ -0.07
TCOF1-207ENST00000504761 RAB27AP51159 221 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 PDK2Q15119 407 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 NFE2Q16621 373 aaPredicted RBP14.64□□□□□ -0.07
TCOF1-207ENST00000504761 SLC39A12Q504Y0 691 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 ZNF280DQ6N043 979 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 CAPNS2Q96L46 248 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 CATSPERBQ9H7T0 1116 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 FAM105AQ9NUU6 356 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 UBR2Q8IWV8 1755 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 PCK1P35558 622 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 HARS2P49590 506 aaKnown RBP14.64□□□□□ -0.07
TCOF1-207ENST00000504761 PTK7Q13308 1070 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 TRADDQ15628 312 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 TSHZ1Q6ZSZ6 1077 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 ASIC4Q96FT7 647 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 MRPL45Q9BRJ2 306 aaKnown RBP14.64□□□□□ -0.07
TCOF1-207ENST00000504761 B3GNT5Q9BYG0 378 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 PDZD7Q9H5P4 517 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 IPPQ9Y573 584 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 NEMP1O14524 444 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 CAND2O75155 1236 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 MYBL2P10244 700 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 BRCC3P46736 316 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 PPP1R26Q5T8A7 1209 aaPredicted RBP14.64□□□□□ -0.07
TCOF1-207ENST00000504761 KLC3Q6P597 504 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 LRIG3Q6UXM1 1119 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 NETO2Q8NC67 525 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 FBXO36Q8NEA4 188 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 MINDY3Q9H8M7 445 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 TMEM39AQ9NV64 488 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 PCMTD2Q9NV79 361 aa14.64□□□□□ -0.07
TCOF1-207ENST00000504761 SMIM28A0A1B0GU29 152 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 NT5C1B-RDH14C9J2C7 533 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 GRM5P41594 1212 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 COPS2P61201 443 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 ERMARDQ5T6L9 678 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 TAS2R42Q7RTR8 314 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 TFAP2DQ7Z6R9 452 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 DEFB118Q96PH6 123 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 TRIM56Q9BRZ2 755 aaKnown RBP14.63□□□□□ -0.07
TCOF1-207ENST00000504761 SUDS3Q9H7L9 328 aaPredicted RBP14.63□□□□□ -0.07
TCOF1-207ENST00000504761 SMPD4Q9NXE4 827 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 SCAMP3O14828 347 aaKnown RBP14.63□□□□□ -0.07
TCOF1-207ENST00000504761 F9P00740 461 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 CYP1A2P05177 515 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 PAPOLAP51003 745 aaKnown RBP14.63□□□□□ -0.07
TCOF1-207ENST00000504761 VCPP55072 806 aaKnown RBP14.63□□□□□ -0.07
TCOF1-207ENST00000504761 AMPD2Q01433 879 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 PRKCZQ05513 592 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 ITGA7Q13683 1181 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 KCNA10Q16322 511 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 FASTKD1Q53R41 847 aaKnown RBP14.63□□□□□ -0.07
TCOF1-207ENST00000504761 FAM183BPQ6ZVS7 135 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 LBHD1Q9BQE6 289 aaPredicted RBP14.63□□□□□ -0.07
TCOF1-207ENST00000504761 MAGEB5Q9BZ81 275 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 CYP4F11Q9HBI6 524 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 PSMC3IPQ9P2W1 217 aaPredicted RBP14.63□□□□□ -0.07
TCOF1-207ENST00000504761 MARCOQ9UEW3 520 aaPredicted RBP14.63□□□□□ -0.07
TCOF1-207ENST00000504761 RAB21Q9UL25 225 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 TSPAN1O60635 241 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 CKMP06732 381 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 RARGP13631 454 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 ETS1P14921 441 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 TAS2R40P59535 323 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 MBTD1Q05BQ5 628 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 ARHGAP1Q07960 439 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 TWF1Q12792 350 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 STKLD1Q8NE28 680 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 APOBEC3GQ9HC16 384 aaKnown RBP14.63□□□□□ -0.07
TCOF1-207ENST00000504761 DSEQ9UL01 958 aa14.63□□□□□ -0.07
TCOF1-207ENST00000504761 SMIM35A0A1B0GVV1 85 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 B4GALT4O60513 344 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 TRIM67Q6ZTA4 783 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 TMC7Q7Z402 723 aa14.62□□□□□ -0.07
TCOF1-207ENST00000504761 WDR75Q8IWA0 830 aaKnown RBP14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms