RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 SMCO2A6NFE2 343 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 FAM47E-STBD1D6RA91 191 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 CLDN3O15551 220 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 FAM189A1O60320 539 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 FAM155BO75949 473 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 AKAP3O75969 853 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 KLHL2O95198 593 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 CAPNS1P04632 268 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 CYP1A2P05177 515 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 CPA2P48052 419 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 PPP4CP60510 307 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 PTP4A2Q12974 167 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 SBK1Q52WX2 424 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 ATG16L1Q676U5 607 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 ZFP1Q6P2D0 407 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 PQLC1Q8N2U9 271 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 CCDC33Q8N5R6 958 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 TRIML2Q8N7C3 387 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 PNMA1Q8ND90 353 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 CLPTM1LQ96KA5 538 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 NSMCE3Q96MG7 304 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 SRPK1Q96SB4 655 aaKnown RBP9.43□□□□□ -0.9
HPS4-217ENST00000496385 TDRD1Q9BXT4 1180 aaKnown RBP9.43□□□□□ -0.9
HPS4-217ENST00000496385 GPR88Q9GZN0 384 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 CHST7Q9NS84 486 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 MCM9Q9NXL9 1143 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 TAS2R14Q9NYV8 317 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 ARMCX1Q9P291 453 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.43□□□□□ -0.9
HPS4-217ENST00000496385 EPS15L1Q9UBC2 864 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 PPARGC1AQ9UBK2 798 aaKnown RBP9.43□□□□□ -0.9
HPS4-217ENST00000496385 APEX2Q9UBZ4 518 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 ITGA11Q9UKX5 1188 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 CARD8Q9Y2G2 431 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 AP4B1Q9Y6B7 739 aa9.43□□□□□ -0.9
HPS4-217ENST00000496385 ARHGAP42A6NI28 874 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.42□□□□□ -0.9
HPS4-217ENST00000496385 EIF3FO00303 357 aaPredicted RBP9.42□□□□□ -0.9
HPS4-217ENST00000496385 PARNO95453 639 aaKnown RBP9.42□□□□□ -0.9
HPS4-217ENST00000496385 POLR2MP0CAP2 368 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 RBP3P10745 1247 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 VDRP11473 427 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 RAG1P15918 1043 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 ETV4P43268 484 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 TNNI2P48788 182 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 C21orf59P57076 290 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 C1QTNF8P60827 252 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 TNFAIP1Q13829 316 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 ARL13BQ3SXY8 428 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 FRA10AC1Q70Z53 315 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 MIER3Q7Z3K6 550 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 PRPF39Q86UA1 669 aaKnown RBP9.42□□□□□ -0.9
HPS4-217ENST00000496385 PLEKHA8Q96JA3 519 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 RANBP9Q96S59 729 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 SLC2A11Q9BYW1 496 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 SLC38A7Q9NVC3 462 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 GID8Q9NWU2 228 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 CNTN3Q9P232 1028 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 ABT1Q9ULW3 272 aaKnown RBP9.42□□□□□ -0.9
HPS4-217ENST00000496385 SSC5DA1L4H1 1573 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 CAPN8A6NHC0 703 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 TSPY2A6NKD2 308 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 F5H6K3 240 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 I3L4J1 428 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 DNALI1O14645 258 aaPredicted RBP9.42□□□□□ -0.9
HPS4-217ENST00000496385 MCF2LO15068 1137 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 SPTLC1O15269 473 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 NR3C1P04150 777 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 KLRC2P26717 231 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 SERPINB6P35237 376 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 RXRGP48443 463 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 EIF2B2P49770 351 aaKnown RBP9.42□□□□□ -0.9
HPS4-217ENST00000496385 KDSRQ06136 332 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 MORF4L2Q15014 288 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 SHROOM1Q2M3G4 852 aaPredicted RBP9.42□□□□□ -0.9
HPS4-217ENST00000496385 RABGAP1LQ5R372 815 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 GJB7Q6PEY0 223 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 TICAM1Q8IUC6 712 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 REXO1Q8N1G1 1221 aaKnown RBP9.42□□□□□ -0.9
HPS4-217ENST00000496385 CENPSQ8N2Z9 138 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 TSPAN14Q8NG11 270 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 ETNPPLQ8TBG4 499 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 ZNF564Q8TBZ8 553 aaPredicted RBP9.42□□□□□ -0.9
HPS4-217ENST00000496385 PPP4R1Q8TF05 950 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 CCDC138Q96M89 665 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 IDI2Q9BXS1 227 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 DCP1AQ9NPI6 582 aaPredicted RBP9.42□□□□□ -0.9
HPS4-217ENST00000496385 SEPT11Q9NVA2 429 aaKnown RBP9.42□□□□□ -0.9
HPS4-217ENST00000496385 GTF3C4Q9UKN8 822 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 PCDHB2Q9Y5E7 798 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 SPO11Q9Y5K1 396 aa9.42□□□□□ -0.9
HPS4-217ENST00000496385 PFDN6O15212 129 aa9.41□□□□□ -0.9
HPS4-217ENST00000496385 ATMINO43313 823 aaPredicted RBP9.41□□□□□ -0.9
HPS4-217ENST00000496385 BMP10O95393 424 aa9.41□□□□□ -0.9
HPS4-217ENST00000496385 PLA2G4BP0C869 781 aa9.41□□□□□ -0.9
HPS4-217ENST00000496385 ADSSP30520 456 aa9.41□□□□□ -0.9
HPS4-217ENST00000496385 TTKP33981 857 aa9.41□□□□□ -0.9
HPS4-217ENST00000496385 PSMC2P35998 433 aaKnown RBP9.41□□□□□ -0.9
HPS4-217ENST00000496385 STT3AP46977 705 aa9.41□□□□□ -0.9
HPS4-217ENST00000496385 FMO5P49326 533 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms