RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 FBXO32Q969P5 355 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 INTS4Q96HW7 963 aaKnown RBP13.45□□□□□ -0.26
SKA1-205ENST00000494518 SLITRK1Q96PX8 696 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 MED10Q9BTT4 135 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 LRRC27Q9C0I9 530 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 ELOVL4Q9GZR5 314 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 EBF1Q9UH73 591 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 ANGPTL2Q9UKU9 493 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 MMP17Q9ULZ9 603 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 LNP1A1A4G5 178 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 K7ELQ4 463 aaPredicted RBP13.44□□□□□ -0.26
SKA1-205ENST00000494518 CUTAO60888 179 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 PPP6R2O75170 966 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 KCNK5O95279 499 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 OAS1P00973 400 aaKnown RBP13.44□□□□□ -0.26
SKA1-205ENST00000494518 IRF1P10914 325 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 PMLP29590 882 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 AFMP43652 599 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 DHPSP49366 369 aaPredicted RBP13.44□□□□□ -0.26
SKA1-205ENST00000494518 BIRC3Q13489 604 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 PMS2CLQ68D20 193 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 RHBDF2Q6PJF5 856 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 UNC13DQ70J99 1090 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 CYP2U1Q7Z449 544 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 FRMD1Q8N878 549 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 NAT16Q8N8M0 369 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 IQUBQ8NA54 791 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 TXNDC5Q8NBS9 432 aaKnown RBP13.44□□□□□ -0.26
SKA1-205ENST00000494518 SCAMP5Q8TAC9 235 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 ERLEC1Q96DZ1 483 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 ZNF396Q96N95 335 aaPredicted RBP13.44□□□□□ -0.26
SKA1-205ENST00000494518 KCNK16Q96T55 309 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 C7orf25Q9BPX7 421 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 LSM14BQ9BX40 385 aaKnown RBP13.44□□□□□ -0.26
SKA1-205ENST00000494518 CUEDC2Q9H467 287 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 EHD2Q9NZN4 543 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 CHORDC1Q9UHD1 332 aaPredicted RBP13.44□□□□□ -0.26
SKA1-205ENST00000494518 ASPMQ8IZT6 3477 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 AKAP13Q12802 2813 aa13.44□□□□□ -0.26
SKA1-205ENST00000494518 UBE4BO95155 1302 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 SGK1O00141 431 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 COCHO43405 550 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 EXOC3O60645 756 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 KAT7O95251 611 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 OLFM2O95897 454 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 APODP05090 189 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 ADH5P11766 374 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 PFKLP17858 780 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 YWHAQP27348 245 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 CUL4BQ13620 913 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 CRY1Q16526 586 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 ZNF699Q32M78 642 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 LY6G5CQ5SRR4 150 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 FAM35AQ86V20 835 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 RASSF3Q86WH2 238 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 ADGRG2Q8IZP9 1017 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 NUP93Q8N1F7 819 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 PIGKQ92643 395 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 WBP2Q969T9 261 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 CNOT6LQ96LI5 555 aaKnown RBP13.43□□□□□ -0.26
SKA1-205ENST00000494518 PNKPQ96T60 521 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 SDCBP2Q9H190 292 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 XYLT2Q9H1B5 865 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 CCSER2Q9H7U1 834 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.43□□□□□ -0.26
SKA1-205ENST00000494518 ARHGEF4Q9NR80 690 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 BCCIPQ9P287 314 aaKnown RBP eCLIP13.43□□□□□ -0.26
SKA1-205ENST00000494518 PCNX2A6NKB5 2137 aa13.43□□□□□ -0.26
SKA1-205ENST00000494518 ATXN2Q99700 1313 aaKnown RBP13.42□□□□□ -0.26
SKA1-205ENST00000494518 LRRIQ3A6PVS8 624 aaPredicted RBP13.42□□□□□ -0.26
SKA1-205ENST00000494518 SLC9A3R1O14745 358 aaPredicted RBP13.42□□□□□ -0.26
SKA1-205ENST00000494518 YEATS4O95619 227 aa13.42□□□□□ -0.26
SKA1-205ENST00000494518 ADH1CP00326 375 aa13.42□□□□□ -0.26
SKA1-205ENST00000494518 CCDC130P13994 396 aa13.42□□□□□ -0.26
SKA1-205ENST00000494518 PPP3CCP48454 512 aa13.42□□□□□ -0.26
SKA1-205ENST00000494518 NOVA1P51513 510 aaKnown RBP13.42□□□□□ -0.26
SKA1-205ENST00000494518 EHHADHQ08426 723 aa13.42□□□□□ -0.26
SKA1-205ENST00000494518 IL17RCQ8NAC3 791 aa13.42□□□□□ -0.26
SKA1-205ENST00000494518 HMGB4Q8WW32 186 aa13.42□□□□□ -0.26
SKA1-205ENST00000494518 SYAP1Q96A49 352 aaPredicted RBP13.42□□□□□ -0.26
SKA1-205ENST00000494518 ZFRQ96KR1 1074 aaKnown RBP13.42□□□□□ -0.26
SKA1-205ENST00000494518 CEP295NLQ96MC4 621 aa13.42□□□□□ -0.26
SKA1-205ENST00000494518 KRT82Q9NSB4 513 aa13.42□□□□□ -0.26
SKA1-205ENST00000494518 GMIPQ9P107 970 aa13.42□□□□□ -0.26
SKA1-205ENST00000494518 ATP8B3O60423 1300 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 TCRBV21S2A2A0A5A6 115 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 KHNYNO15037 678 aaKnown RBP13.41□□□□□ -0.26
SKA1-205ENST00000494518 TRIM24O15164 1050 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 AP1G2O75843 785 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 ALDH1A2O94788 518 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 RTN3O95197 1032 aaPredicted RBP13.41□□□□□ -0.26
SKA1-205ENST00000494518 CHRM1P11229 460 aaPredicted RBP13.41□□□□□ -0.26
SKA1-205ENST00000494518 WASP42768 502 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 ME1P48163 572 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 PGFP49763 221 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 SLC5A3P53794 718 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 MRPS21P82921 87 aaKnown RBP13.41□□□□□ -0.26
SKA1-205ENST00000494518 KNOP1Q1ED39 458 aaKnown RBP13.41□□□□□ -0.26
SKA1-205ENST00000494518 BMT2Q1RMZ1 405 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms