RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 TRIM49D1C9J1S8 452 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 KRT36O76013 467 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 SLC26A2P50443 739 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 PTPN11Q06124 597 aaPredicted RBP16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 PAN2Q504Q3 1202 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 CASZ1Q86V15 1759 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 SLC7A14Q8TBB6 771 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 VPS39Q96JC1 886 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 CLMNQ96JQ2 1002 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 PLEKHA5Q9HAU0 1116 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 PDHXO00330 501 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 PSTPIP1O43586 416 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 GRIN3BO60391 1043 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 PEX10O60683 326 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 NDUFAF2Q8N183 169 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 ATP6V1E2Q96A05 226 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 FAM210AQ96ND0 272 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 TLR2O60603 784 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 HSPA8P11142 646 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 CHRM1P11229 460 aaPredicted RBP16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 TAF6P49848 677 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 RNF220Q5VTB9 566 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 LNX1Q8TBB1 728 aaPredicted RBP16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 EPAS1Q99814 870 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 TBC1D23Q9NUY8 699 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 TMCC1O94876 653 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 KLHL2O95198 593 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 TRMT5Q32P41 509 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 RNF43Q68DV7 783 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 C11orf63Q6NUN7 778 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 IRF2BP2Q7Z5L9 587 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 URGCPQ8TCY9 931 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 PPP2R3CQ969Q6 453 aa16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 UBQLN1Q9UMX0 589 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-209ENST00000494080 FCHO1O14526 889 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 GLRA2P23416 452 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 TMED10P49755 219 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 OTUD4Q01804 1114 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 POU5F1BQ06416 359 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 HGSNATQ68CP4 663 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 ISLR2Q6UXK2 745 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 LRRC6Q86X45 466 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 FITM2Q8N6M3 262 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 CCNYL1Q8N7R7 359 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 PRELID2Q8N945 189 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 OR6P1Q8NGX9 317 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 FAM192AQ9GZU8 254 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 GBA2Q9HCG7 927 aaPredicted RBP16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 TTC36A6NLP5 189 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 NEMP1O14524 444 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 PSMG1O95456 288 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 ADORA2AP29274 412 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 COPAP53621 1224 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 OCRLQ01968 901 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 GJC2Q5T442 439 aaPredicted RBP16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 PORCNQ9H237 461 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 MID2Q9UJV3 735 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 COL14A1Q05707 1796 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 RGPD5Q99666 1765 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 SNRPAP09012 282 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 TCN1P20061 433 aaPredicted RBP16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 BGNP21810 368 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 CASP2P42575 452 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 ZNF268Q14587 947 aaPredicted RBP16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 TFDP3Q5H9I0 405 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 ZNF75CPQ92670 426 aaPredicted RBP16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 CMTM5Q96DZ9 223 aa16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 PDGFDQ9GZP0 370 aaPredicted RBP16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 SETD1AO15047 1707 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-209ENST00000494080 B3GAT3O94766 335 aa16.89■□□□□ 0.3
CCDC88B-209ENST00000494080 VDRP11473 427 aa16.89■□□□□ 0.3
CCDC88B-209ENST00000494080 OCA2Q04671 838 aa16.89■□□□□ 0.3
CCDC88B-209ENST00000494080 TSTA3Q13630 321 aaPredicted RBP16.89■□□□□ 0.3
CCDC88B-209ENST00000494080 SV2CQ496J9 727 aa16.89■□□□□ 0.3
CCDC88B-209ENST00000494080 BOLA3Q53S33 107 aa16.89■□□□□ 0.3
CCDC88B-209ENST00000494080 COBLL1Q53SF7 1204 aa16.89■□□□□ 0.3
CCDC88B-209ENST00000494080 CAAP1Q9H8G2 361 aa16.89■□□□□ 0.3
CCDC88B-209ENST00000494080 ZFYVE28Q9HCC9 887 aa16.89■□□□□ 0.3
CCDC88B-209ENST00000494080 KPNA7A9QM74 516 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 GCLCP48506 637 aaPredicted RBP16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 IL1RL1Q01638 556 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 SLC12A1Q13621 1099 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 BRSK2Q8IWQ3 736 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 FAM13CQ8NE31 585 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 ACTL9Q8TC94 416 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 PAFAH2Q99487 392 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 ACO1P21399 889 aaKnown RBP16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 ADRA1DP25100 572 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 ADCYAP1R1P41586 468 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 CLK2P49760 499 aaKnown RBP16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 HSD17B4P51659 736 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 BNIP1Q12981 228 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 ZPBP2Q6X784 338 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 SPATA2LQ8IUW3 424 aaPredicted RBP16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 RAET1EQ8TD07 263 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 BCAS3Q9H6U6 928 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 COL20A1Q9P218 1284 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 KDM3BQ7LBC6 1761 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 ACKR2O00590 384 aa16.89■□□□□ 0.29
CCDC88B-209ENST00000494080 CCNE2O96020 404 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms